Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01017 ATGTATATAACGACGGCCTCTTCCTCTGCCACTTCGCTCCTCAGAGCAACCAGGCCCAAACTCTTCTCTCCCTCACCTTCTAGAACCTTCGCTTATCCACGTTCCTTCGCTCCCTACTCCTCCCGCACCTCCTCCGCCGTCACGCGATCCTTGCGCGCCTCCCTTCCCCGCTGGAGCCACCGCCTCCATCGCGCCTCTCCTCAAATCAGAGCCGTTGCTCCCGCCGCCCAACGCTTCCGCCGCGAAATCGCTACCATGGCCAATGAAAATCCTTTCAGCGGAAACTTGACGAGTCTCCCCAAGCCTGGTGGTGGCGAGTTTGGAAAGTTCTACAGTCTTCCTTCTCTCAATGATCCGAGAATTGACAGGTTACCGTACTCCATCAGAATTCTCCTTGAATCTGCCATTCGTAACTGTGACAATTTTCAAGTCAAAAAGGAAGATGTTGAGAAGATTCTTGACTGGGAAAACACTTCTACGAAGCAAGTTGAGATTCCTTTCAAGCCCGCACGTGTTCTCTTGCAGGATTTTACTGGAGTCCCTGCTGTTGTTGACCTGGCTTGCATGCGTGATGCTATGAATAAGCTTGGAAGTGATTCAAATAAGATCAACCCTCTGGTTCCTGTTGATCTTGTCATTGATCATTCAGTTCAAGTTGACATTGCAAGGTCAGAAAATGCAGTGCAGGCCAACATGGAGCTTGAATTTCAGAGAAACAAGGAGAGATTTGCTTTTCTTAAATGGGGTTCAACTGCATTCCGTAACATGCTTGTTGTTCCTCCTGGTTCTGGTATAGTACATCAGGTCAATCTTGAATATCTTGGAAGGGTTGTATTCAACAATGAGGGCTTACTCTATCCTGACAGTGTGGTTGGGACTGATTCACATACAACTATGATAGACGGGCTTGGTGTTGCTGGATGGGGAGTTGGAGGCATTGAAGCTGAGGCAGCAATGCTTGGTCAGCCTATGAGCATGGTTTTGCCTGGTGTTGTTGGGTTCAAGCTTTCTGGAAAACTACGTGATGGTGTTACAGCAACAGACTTGGTTCTAACTGTGACTCAAATTCTCAGAAAGCATGGTGTTGTGGGGAAATTTGTAGAATTTTATGGTGATGGTATGGGTGAATTATCTTTGGCTGACAGGGCCACTATTGCCAATATGTCTCCTGAATATGGTGCCACTATGGGATTCTTCCCTGTGGATCATGTTACATTACAATATCTCAAGTTAACCGGAAGAAGTGATGAAACTGTGGCCATGATAGAATCTTATCTCAGGGAAAACAAACTGTTTGTTGACTATAGTGAGCCCCAACAAGACAGGGTGTATTCATCATATCTAGAATTAAACCTTTCTGATGTTGAACCATGTATGTCAGGTCCAAAGAGACCTCATGATCGGGTGCCATTGAAAGAAATGAAGGCTGACTGGCATGCTTGTCTTGATAATAAAGTTGGGTTTAAGGGATTTGCTATACCAAAAGAGGCACAAGGAAAAGTTGCAAAATTTGATTTCCATGGGCAGCCAGCAGAGCTCAAGCATGGCAGTGTGGTGATTGCTGCAATCACAAGCTGTACAAATACATCAAACCCAAGTGTCATGCTAGGTGCTGGTCTTGTTGCAAAAAAGGCTCATGAGCTTGGTTTGCAGGTCAAGCCTTGGGTTAAAACAAGTCTTGCTCCAGGCTCTGGAGTTGTTACAAAATATTTACTCCAGAGTGGACTGCAAAAATATCTAAATGAACAAGGTTTTCATATTGTTGGGTTTGGCTGTACTACATGTATTGGAAATTCAGGAGAGCTGGATGAATCCGTTTCTTCTGCCATATCAGAAAATGACATTGTAGCAGCTGCTGTGTTGTCTGGGAACCGTAATTTTGAGGGCAGAGTACATCCATTAACCAGAGCCAACTATCTTGCCTCTCCTCCTCTAGTTGTTGCTTATGCTCTTGCTGGCACGGTTGATATTGACTTTGAGAAGGAGCCAATTGGGACAGGGAAGGATGGAAAGAATGTCTACTTGAGGGATATCTGGCCATCCACTGAAGAAATTGCCACGGTTGTCCAATCCAGCGTGTTGCCTGACATGTTCCGAAGTACATATGAGGCTATTACCAAAGGGAACCCCATGTGGAATCAGCTACAAGTTCCTGCTGCAACTCTCTACTCATGGGATCCCAACTCAACATATATTCATGAACCCCCATACTTCAAGAACATGACCATGGATCCTCCTGGACCTCATGGTGTAAAAGATGCTTATTGCTTGCTGAATTTTGGTGACAGTATAACCACTGATCATATTTCTCCTGCTGGAAGCATCCACAAGGACAGTCCTGCTGCTAAATACCTTCTTGAGCGTGGGGTGGAACGCAAGGACTTCAATTCTTACGGAAGTCGTCGTGGCAATGATGAGGTGATGGCAAGGGGAACTTTTGCCAACATTCGCCTTCTTAACAAGCTCTTGAATGGGGAAGTTGGCCCAATGACAATTCACATTCCAACAGGGGAAAAACTGTACGTGTTTGATGCAGCAACGAGATACAAGGCATCTGGGCAAGACACCATTGTGCTGGCTGGAGCTGAATATGGTAGCGGGAGTTCTAGAGATTGGGCTGCCAAGGGTCCAATGCTACTGGGAGTCAAAGCTGTGATTGCTAAGAGTTTCGAAAGAATTCATCGCAGTAATTTGGTAGGAATGGGTATTATTCCTCTCTGCTTCAAAGCCGGTGAGGATGCGGACACATTGGGATTGACTGGTCATGAACGATATACGATTGACCTCCCAAGTAAAATCAATGAGATTAGGCCTGGCCAAGATGTCACAGTTACAACCGATAATGGAAAATCTTTCACCTGCACAGTACGCTTTGACACTGAGGTTGAACTTGCTTACTTCAACCACGGAGGCATACTTCCATATGTAATAAGGAACCTCATTAAGCAGTGA 2952 0.4563 MYITTASSSATSLLRATRPKLFSPSPSRTFAYPRSFAPYSSRTSSAVTRSLRASLPRWSHRLHRASPQIRAVAPAAQRFRREIATMANENPFSGNLTSLPKPGGGEFGKFYSLPSLNDPRIDRLPYSIRILLESAIRNCDNFQVKKEDVEKILDWENTSTKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDIARSENAVQANMELEFQRNKERFAFLKWGSTAFRNMLVVPPGSGIVHQVNLEYLGRVVFNNEGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQILRKHGVVGKFVEFYGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIESYLRENKLFVDYSEPQQDRVYSSYLELNLSDVEPCMSGPKRPHDRVPLKEMKADWHACLDNKVGFKGFAIPKEAQGKVAKFDFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGFGCTTCIGNSGELDESVSSAISENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKNVYLRDIWPSTEEIATVVQSSVLPDMFRSTYEAITKGNPMWNQLQVPAATLYSWDPNSTYIHEPPYFKNMTMDPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVERKDFNSYGSRRGNDEVMARGTFANIRLLNKLLNGEVGPMTIHIPTGEKLYVFDAATRYKASGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADTLGLTGHERYTIDLPSKINEIRPGQDVTVTTDNGKSFTCTVRFDTEVELAYFNHGGILPYVIRNLIKQ 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01017 983 Gene3D Aconitase, domain 3 89 457 IPR015931 -
Cca04g01017 983 Pfam Aconitase family (aconitate hydratase) 150 653 IPR001030 -
Cca04g01017 983 ProSitePatterns Aconitase family signature 2. 584 597 IPR018136 -
Cca04g01017 983 Gene3D - 682 743 - -
Cca04g01017 983 Pfam Aconitase C-terminal domain 782 910 IPR000573 -
Cca04g01017 983 SUPERFAMILY LeuD/IlvD-like 722 981 - -
Cca04g01017 983 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 56 983 IPR006249 -
Cca04g01017 983 CDD AcnA_IRP 171 655 - -
Cca04g01017 983 Gene3D Aconitase, domain 3 458 681 IPR015931 -
Cca04g01017 983 TIGRFAM aconitase_1: aconitate hydratase 1 108 981 IPR006249 -
Cca04g01017 983 CDD AcnA_IRP_Swivel 759 929 IPR044137 -
Cca04g01017 983 PRINTS Aconitase family signature 232 245 IPR001030 -
Cca04g01017 983 PRINTS Aconitase family signature 256 264 IPR001030 -
Cca04g01017 983 PRINTS Aconitase family signature 285 298 IPR001030 -
Cca04g01017 983 PRINTS Aconitase family signature 299 314 IPR001030 -
Cca04g01017 983 PRINTS Aconitase family signature 361 374 IPR001030 -
Cca04g01017 983 PRINTS Aconitase family signature 375 388 IPR001030 -
Cca04g01017 983 PRINTS Aconitase family signature 457 471 IPR001030 -
Cca04g01017 983 PRINTS Aconitase family signature 522 533 IPR001030 -
Cca04g01017 983 PRINTS Aconitase family signature 584 597 IPR001030 -
Cca04g01017 983 PANTHER ACONITATE HYDRATASE 56 983 - -
Cca04g01017 983 ProSitePatterns Aconitase family signature 1. 518 534 IPR018136 -
Cca04g01017 983 SUPERFAMILY Aconitase iron-sulfur domain 104 718 IPR036008 -
Cca04g01017 983 Gene3D Aconitase, domain 4 746 982 IPR015928 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01017 Cca-Chr4 11071179 11080408 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01017 K01681 - gmx:100778506 1845.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01017 04 11071179 11080408 Cca04g01017 04 11071179 11080408 ECH
Cca10g00711 10 8048427 8057608 Cca04g01017 04 11071179 11080408 PCT