Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00690 ATGGCCGAATTCTTAAGCCCTAATCCAACGACGGGCCAAAAAAAGAGGGTTCCCGTGTCCGCTCGTATCCAATCTCCCACCACCACTTTCTTCGTGGGCTCCAACGACGACCAGCTCGAACGGGCCCAAGCCCGCGCGGCCCGCGCCGCTGCCATCCGCCGCAAGGCCCTTGCCGCCAACTTCCACTCCCAACGCCCCGATTCTCATCCCTGTCTAAACAAACAACAGATTATCGCTTTGTTCCACAACTGCATTAAGCTTGCCTCCGAAAATAAAATTAATCAGAAAAACACATGGGAGTTGGATTTGATTGATCACCTCACTCATATTATTAGGGCCGACGAAGGGGATCACGTGGAGACTAATTTTCAAATAGCAAGCTGTACACTTGAGGCTGGTGTCAAAATTTATTCCTTAAGGGTGGATTCGGTGCATTCCGAGGCGTATAAAGTCCTAGCTAGAATGAATAGAGCAGGCCAAGATACTGAAGACTCTACTCTAGGGAGTATTAATACTGAAGGTGGACAAAGAAGCAGCAGGAAGGAAATTGACAAAAAGTTGTCACCTTTGTCAACGTTGGAATCATCTTTTGAGGTTCTTAATGTAAAGAAGTTTGACGTTGCATTTGCCATTGATCCACTCTATCGCCAGACATCAGCACAATTTGATGAAGGTGGAGCTAAAGGCCTTTTGATGAATAATCTCGGTGTATATGGTAGATGTAGGGTACTCTTTGATTCACTAGAAGTTCCAGGGAAGTGCATAGCCAGTCAAAATGAACATGATATTTCAGATACAATTGATCTTTCTTTTGCCAGAGATTGTGTTGAACAGATGCTATTGAACATGCATACGAAGGATGAAATATCTCCAACTCTCAGGTTGATAGTAAATCAATTTGAAGAAAATAATAGAAGGCCTTCTGATTTTCAATTTTCTGGCCAGAAATCAGCTGAAGAGTTTAATTCAGCTATTGATTGTGAACTTGCCACTGAAAAAGAAAAATATGAGAACTGCCCATCCCTTAGCGATGATCATGCTAGCCAAACATTTATTGCTGAATGTGGTTCTGATGATGCAGACCCAAGTTTTCATAGTTTCCATCAGGAAAAAGAACATTTTCATTCCCAAGACCCTGATACAGACGACGTTTTTGAAAATGTTGATGAGTATTTATTTTTTAGTCTGGGTTTTAGGTCAAAGAAAAATGCATGGGCAGGCCCTGATTATTGGAAGTATCGAAAAGCTGAAGGCTCAGAATCAGAGGTTCATCGTACTTCTGAGGATGGATTGATCCAGAAAACCATGCAACAAAGGACAAAGAGACATGCCGAAGTTGATTTAGATTTCACAAGTTTTGTTGAAAAAAAAATACCATACATCTTTTCTCCTCCCAGGAATCCCAAATCATTACAGCTCCCTGAAAATATACCACCTTGTGTTACAAAACTTCCAGAGGATTGCCACTATGAACCAGAGGAGCTGGTCAAGTTGTTTCTCTTGCCGTATGTAAAGTGTATTAGGAGGTCGAGAAAGTTCTCAGGTGTATTTGCGGATGTATCAGGAGATCAATGCAATGACTATGAATCATTCCCTTCCTGGGATAATGGAAGTGTTTGTGATGGTGATGTTACTGATGAACATAGTGACGTGGATGATTCTAGTACATTAGTCTCTCAGCCTCGTCAGATCAATAAAATTGAAGTCCAGTATGACAAAACATCCAAACAAGTCAATGTTCAGGCTTTGAAAATAACACTTTGGGACCATATTCAAGAATCTACACAACTTCCTTTTCAGGGACAAAAAGAAATGGTATCTTTCAGGCATATATTGGCCAACTTTCCAAGTAAGTTCAATGCTGCTGCAACTATTAGTGACATATCTCCGCACCTGTGTTTCATATGCCTATTGCATTTGGCTAATGAGAGAGGGTTGAACATCCAAAGCTGCCCCAACTTGGATGATCTTGGCATATGCCTACCTGATGATGGTGCCACTAACACCGGAACAGTTTAG 2019 0.418 MAEFLSPNPTTGQKKRVPVSARIQSPTTTFFVGSNDDQLERAQARAARAAAIRRKALAANFHSQRPDSHPCLNKQQIIALFHNCIKLASENKINQKNTWELDLIDHLTHIIRADEGDHVETNFQIASCTLEAGVKIYSLRVDSVHSEAYKVLARMNRAGQDTEDSTLGSINTEGGQRSSRKEIDKKLSPLSTLESSFEVLNVKKFDVAFAIDPLYRQTSAQFDEGGAKGLLMNNLGVYGRCRVLFDSLEVPGKCIASQNEHDISDTIDLSFARDCVEQMLLNMHTKDEISPTLRLIVNQFEENNRRPSDFQFSGQKSAEEFNSAIDCELATEKEKYENCPSLSDDHASQTFIAECGSDDADPSFHSFHQEKEHFHSQDPDTDDVFENVDEYLFFSLGFRSKKNAWAGPDYWKYRKAEGSESEVHRTSEDGLIQKTMQQRTKRHAEVDLDFTSFVEKKIPYIFSPPRNPKSLQLPENIPPCVTKLPEDCHYEPEELVKLFLLPYVKCIRRSRKFSGVFADVSGDQCNDYESFPSWDNGSVCDGDVTDEHSDVDDSSTLVSQPRQINKIEVQYDKTSKQVNVQALKITLWDHIQESTQLPFQGQKEMVSFRHILANFPSKFNAAATISDISPHLCFICLLHLANERGLNIQSCPNLDDLGICLPDDGATNTGTV 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00690 672 PIRSF Condensin_H 270 555 IPR022816 GO:0000796|GO:0007076
Cca10g00690 672 PIRSF Condensin_H 5 275 IPR022816 GO:0000796|GO:0007076
Cca10g00690 672 PIRSF Condensin_H 542 664 IPR022816 GO:0000796|GO:0007076
Cca10g00690 672 MobiDBLite consensus disorder prediction 161 185 - -
Cca10g00690 672 PANTHER CONDENSIN COMPLEX SUBUNIT 2 1 666 IPR022816 GO:0000796|GO:0007076
Cca10g00690 672 PANTHER CONDENSIN COMPLEX SUBUNIT 2 1 666 - -
Cca10g00690 672 MobiDBLite consensus disorder prediction 161 176 - -
Cca10g00690 672 Pfam Condensin complex subunit 2 25 510 IPR022816 GO:0000796|GO:0007076
Cca10g00690 672 Pfam Condensin complex subunit 2 547 659 IPR022816 GO:0000796|GO:0007076
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00690 Cca-Chr10 7703352 7707887 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00690 K06676 - gmx:100777082 1103.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00690 10 7703352 7707887 Cca10g00690 10 7703352 7707887 ECH
Cca10g00690 10 7703352 7707887 Cca04g00996 04 10816217 10821035 PCT