Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00996 ATGGCGGAAGCCCTAAGCCCCAACCCCACGGTGGGTCCCAAGCAGAGGCTCCGCATCCAATCCCCCACCAGCCCCTTCTTCCTGGGCTCCAACGACGACCAGCTCGAACGCGCCCAGGCACGcgccgcccgcgccgccgccattcgccgccgGAGCCTCGCCCTCAACCAACCTCTTCAGGCCAATTCCGATCCCTGCCTCAACAAACAACAGATCCTCGACCTGTTCCAAAACTGCATCAAACTCGCCAGCGAAAACAAAATTAATCAGAAAAACACGTGGGAGTTGAACCTGATTGACCATCTCACCGATATCATCAAGGCCGAAGAAGAAAATGATGCCGAGACTAATTTTCAAAAGGCAAGTTGCACCCTCGAGGCTGGAGTCAAAATTTATTCATTAAGGGTGGACTCGGTGCATTCCGAGGCGTATAAAGTTCTTGGTGGGATGAATAGAGCAGGCCAAGAAGCTGAGCAAGACACTACCTTGGAGGGTGATAATATTGAAAGTGGGCAGGAAGAAAGCAGGAAAGAACCGAACAAAAAGTTGTCACCTTTGACAACATTGGAATCATCTTTTGAGGGACTTAATGCAAAGAAGTTTGATGCTGCATTTGTCGTGGATCCTCTCTATCGCCAGACAACCGCAAAATTTGATGAAGGTGGAGCCAAAGGGCTTTTAATGAATAATCTCGGTGTATATGGTGGATGTAGGGTACTCTTTGATTCACTAGAAGTGCCTGCGAAGTATATGGGAAGCCAAAATCAATCTGATATTTCAGATACTATTGATCTTTCTTTTGTCAGAGATTGTATCGAGCAGATGGTGTTGGACTTGCGTGTGAAGGATGAAATTTCTCCAACTCTCAGGACTATAGTAAACCAATTCGATGAAAACAACAGAAGGCCCATTGATTTTCAACTTCATAGCCAGgatgcagctgaagatcatgatgctgctttcaatgatgtaaatggttttgatcatgatgatcatgatgaGAACTGCACGGCCTGGGGTGATGATCATGATGACCAAACAGATGTTCCCGATCTAGGCTGTAATGACGCAGATCCAAGTTTTCCCAGTTACCCTCAGGACAATGAGCCATTTTCTTCCCCAGACGGTGATATGGATGAAAGATTTGAAAATGTTGACGGCTATTTGTTTTTGAGTTTGGGCTTTTCTTCAAAACAAAATGCATGGGCAGGTCCTGATCATTGGAAGTTTCGAAAATCCAAAGTCTCAGAGGTTCATCCTACTTCTGAAGATGGGTCGACCCTAAAAAGTAGGCAGACAAAGAGTAAGAGACAGGCTGAAGTTGATTTAAATTTCACAAATTCTCTTGAGAAAAAAATGCTCGATATTTTTTCTCCTCCCAAGAATCCCAAATTGTTACTACTCCCTGAAAGCAGATTGCCTTGCAATACAAAACTACCTGAGGACTGCCACTATCAGCCAGAGAATCTCGTCATGTTATTTCTTCTGTCTAATGTGAAGTGTCTCGGGAGAAGGGCAAACAAGTTCTCAGATGGATCTAGAGAACAATACAATGAATATGAATCGGTCCCTTCATGGGATAATGGAAGTGTTTGTGGGGATGACTCTGGTGGCTACGAAGGTGATCTTCATAGTGACATGGAGGACTCCAACAATCTTATTAATCAGCCTCGTCAGGTCAATAAAATTGAAGTCCAGTATGACAAGACTTCCAAACAAGTTGATGTTCAGGCACTAAAATTTACTCTTTGGGACCATGTTCAAGAATCTGTTAAACTTCCTTTACAGGATCAAAAAGATACCATATCTTTCAAGAATATATTGGCCAACTTACCTAGCGAATGCAATGCTGCTGCAACCATTAGTGACATCTCTCCTCATTTGTGCTTCATATGTCTATTGCATTTGGCAAACGAGAAAGGATTGAGCATTCAAAGCTGCCCCGACTTGGATGATCTAGCCATACGCCTTCCACATGTTGCTGACTCTATAAGGGGAACAGTTTAG 2007 0.417 MAEALSPNPTVGPKQRLRIQSPTSPFFLGSNDDQLERAQARAARAAAIRRRSLALNQPLQANSDPCLNKQQILDLFQNCIKLASENKINQKNTWELNLIDHLTDIIKAEEENDAETNFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGMNRAGQEAEQDTTLEGDNIESGQEESRKEPNKKLSPLTTLESSFEGLNAKKFDAAFVVDPLYRQTTAKFDEGGAKGLLMNNLGVYGGCRVLFDSLEVPAKYMGSQNQSDISDTIDLSFVRDCIEQMVLDLRVKDEISPTLRTIVNQFDENNRRPIDFQLHSQDAAEDHDAAFNDVNGFDHDDHDENCTAWGDDHDDQTDVPDLGCNDADPSFPSYPQDNEPFSSPDGDMDERFENVDGYLFLSLGFSSKQNAWAGPDHWKFRKSKVSEVHPTSEDGSTLKSRQTKSKRQAEVDLNFTNSLEKKMLDIFSPPKNPKLLLLPESRLPCNTKLPEDCHYQPENLVMLFLLSNVKCLGRRANKFSDGSREQYNEYESVPSWDNGSVCGDDSGGYEGDLHSDMEDSNNLINQPRQVNKIEVQYDKTSKQVDVQALKFTLWDHVQESVKLPLQDQKDTISFKNILANLPSECNAAATISDISPHLCFICLLHLANEKGLSIQSCPDLDDLAIRLPHVADSIRGTV 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00996 668 MobiDBLite consensus disorder prediction 169 183 - -
Cca04g00996 668 Pfam Condensin complex subunit 2 24 545 IPR022816 GO:0000796|GO:0007076
Cca04g00996 668 Pfam Condensin complex subunit 2 545 656 IPR022816 GO:0000796|GO:0007076
Cca04g00996 668 MobiDBLite consensus disorder prediction 154 186 - -
Cca04g00996 668 PIRSF Condensin_H 536 659 IPR022816 GO:0000796|GO:0007076
Cca04g00996 668 PIRSF Condensin_H 1 271 IPR022816 GO:0000796|GO:0007076
Cca04g00996 668 PIRSF Condensin_H 258 543 IPR022816 GO:0000796|GO:0007076
Cca04g00996 668 PANTHER CONDENSIN COMPLEX SUBUNIT 2 1 661 IPR022816 GO:0000796|GO:0007076
Cca04g00996 668 MobiDBLite consensus disorder prediction 414 439 - -
Cca04g00996 668 MobiDBLite consensus disorder prediction 1 23 - -
Cca04g00996 668 PANTHER CONDENSIN COMPLEX SUBUNIT 2 1 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00996 Cca-Chr4 10816217 10821035 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00996 K06676 - gmx:100799781 1137.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00996 04 10816217 10821035 Cca04g00996 04 10816217 10821035 ECH
Cca10g00690 10 7703352 7707887 Cca04g00996 04 10816217 10821035 PCT