Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00684 ATGGATTATGGCGTCTCCAACCTCCGCATCTTCTGCACTCTCCTTTTCCCTCTCTTAATTCTCCTCCAGGCACTACCAGCGTCACCCACGGCTCAGATTAACTCAAACTCAATCCTCGTGGCGCTTCTCGACTCGCATTACACCGAACTCGCAGAGCTCGTGGAGAAGGCCATGCTGTTGCAGAAGCTAGAAGAAACCGTCGCAAACCACAATATAACAATATTCGCTCCAACCAACGAAGCTTTGGACCGAAACCTCCACCCCGATTTCAAGCGGTTCCTCCTCGAACCCGCGAACCTTCACTCTCTTCAAACGCTTATTCTGTTCCACATCATTCCCacgcaaatcggatcccaaacccaaaccctagcccGCCACGTCACAACTCTCTCCAATCAAAACCTCCACCTCGCCGCAAACCTCACCGCCGTCGACCACGCCCGCGTCACCCGCCCCGACGCCATGACCCGCCCCGACGGCGTCATCCACGCCATCGACCGCCTCCTCCTCCCCCGCGCCGTCGAGGACGACTTCAACCGCCGCCGCAGCCTCCGCTCCATCTCCGCCGTCAAACCAGAGGGCGCCCCGGAGGTCGATCCCAGGACTCACCGTTTGAAAAAGCCTCCGCCGCCGGCGCCACCGGGCTCCCCGCCTGCGCTTCCGATCTACGACGCCATggctccggggccctcgctggctccggcgccggcgccgggaccggGGGGACCGCGGCACCACTTCAACGGCGAGAGGCAGGTGAGGGACTTTATCCAAACGCTGCTCCACTACGGCGGGTACAACGAGATGGCGGACATTCTGGTGAATCTGACGTCGTTGGCGACGGAAATGGGTCGTTTAGTTTCAGAGGGTTACGTGCTCACCGTTTTGGCGCCGAACGACGAGGCGATGGCGAAGTTGGCGACGGAGCAGTTGAGCGAACCGGGCGCGCCGGAGCAGATAATGTACTATCATATAATACCCGAGTATCAAACCGAAGAGAGCATGTACAATGCCGTTAGAAGGTTCGGGAAGGTTCGCTATGATACTCTGAGGTTGCCGCATAAGGTGGTGGCGCAGGAGGCTGATGGGTCGGTTAAGTTCGGGCTTGGAGACGGATCGGCTTATTTGTTCGACCCGGATATATATACCGACGGTCGGATCTCGGTTCAGGGGATTGATGGGGTTTTGTTTCCGATGGAGGAAGAGGCGGAGCGGGTTAAACCCGTTACCCGGACGGGTCAACCCGCCGCCAAAGTTGTTAAGCACAGGAGAGGGAAATTGCTGGAAACAGCTTGCTGGATGCTTGGAACCTTTGGACAGCATTCTAGATTCGCCTCTTGTCAATGA 1347 0.5397 MDYGVSNLRIFCTLLFPLLILLQALPASPTAQINSNSILVALLDSHYTELAELVEKAMLLQKLEETVANHNITIFAPTNEALDRNLHPDFKRFLLEPANLHSLQTLILFHIIPTQIGSQTQTLARHVTTLSNQNLHLAANLTAVDHARVTRPDAMTRPDGVIHAIDRLLLPRAVEDDFNRRRSLRSISAVKPEGAPEVDPRTHRLKKPPPPAPPGSPPALPIYDAMAPGPSLAPAPAPGPGGPRHHFNGERQVRDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLATEQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGLGDGSAYLFDPDIYTDGRISVQGIDGVLFPMEEEAERVKPVTRTGQPAAKVVKHRRGKLLETACWMLGTFGQHSRFASCQ 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00684 448 MobiDBLite consensus disorder prediction 185 248 - -
Cca10g00684 448 SUPERFAMILY FAS1 domain 34 171 IPR036378 -
Cca10g00684 448 Gene3D FAS1 domain 38 172 IPR036378 -
Cca10g00684 448 SUPERFAMILY FAS1 domain 232 399 IPR036378 -
Cca10g00684 448 ProSiteProfiles FAS1/BIgH3 domain profile. 34 169 IPR000782 -
Cca10g00684 448 Pfam Fasciclin domain 46 171 IPR000782 -
Cca10g00684 448 Pfam Fasciclin domain 288 381 IPR000782 -
Cca10g00684 448 MobiDBLite consensus disorder prediction 207 224 - -
Cca10g00684 448 ProSiteProfiles FAS1/BIgH3 domain profile. 253 381 IPR000782 -
Cca10g00684 448 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 3 448 IPR044654 -
Cca10g00684 448 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 3 448 - -
Cca10g00684 448 SMART fasc_3 294 399 IPR000782 -
Cca10g00684 448 SMART fasc_3 73 172 IPR000782 -
Cca10g00684 448 Gene3D FAS1 domain 248 398 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00684 Cca-Chr10 7625425 7628949 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00684 - - gmx:100782264 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00684 10 7625425 7628949 Cca04g00992 04 10766374 10770582 PCT