Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00992 ATGGATCGCAGAATCTATGGCGTTACCTTTctcctcctcttcctcctccCAACCCTCACATTCTCTCTGCCACAGGGCCAAATAAACTCTAACTCAATCCTCGTGGCCTTGTTGGACTCGCATTACACCGAGGTAGCAGAGTTAGTCGAAAAAGCCATGCTCCTCCAAACGCTCGAAAACACGGTAATGAAGCACAACATCACAATCTTCGCACCAAGAAACGAAGCCCTAGAACGCAATCTCGACGCCGATTTCAAGCGTTTCCTCTTGGAACCCCGCAACCTCCCCTCCCTCCAAACCCTCCTCATGTCCCACATCGTTCCCTCACGGATCATCCAACCCGGGTCAAACCCGACCCGAATTAAAACCCTAGCTCCAAACCACCACCTCACTCTTCAAGCTCCAAATAACAAACACAATATCTCTCATTGGATTGTTGACTCCTCCCGGGTCACCCACCCGGGTTCTGTGACCCGACCCGACGGAGTTATCCACGGCATCGACTCCCTCCTCATCCCGCGGTCCGTCCAAGACGCCTTCAACCGCCGCCGGAGCCTCACCTCCATCGCCGCCGTGAAACCAGAACCCGCCCCGGAGGTCGACCCGCGGACGCACCGGTTAAAAAAACCGGCGCCGCCGCAGAAGCCTGGCTCTCCCCCGGCCCTTCCGATCTACGACGCGATggcgccggggccttcacttgcgccggcgccggcgccgggacccggcggcccccggcaccACTTCAACGGCGAGAGGCAGGTGAAGGATTTCATCCAAACGCTCCTCCATTATGGTGGTTACAACGAAATGGCGGATATTCTGGTGAACCTAACGTCGCTGGCTACGGAGATGGGACGGTTGGTTTCGGAGGGTTACGTTTTGACGGTGCTGGCTCCTAACGACGAGGCCATGGCGAAGTTAACGACGGACCAGTTGAGTGAACCGGGTTCGCCCGAACAGATTATGTACTATCACTTGATTCCTGAGTATCAGACCGAAGAGAGCATGTATAACGCCGTTAGACGGTTCGGGAAGGTCCGTTACGACACGTTACGTTTGCCTCATAAGGTAACGGCGCAGGAGGCTGACGGCTCCGTTAAGTTCGGCCACGGGGACGGGTCGGCTTATTTGTTCGACCCGGATATTTACACTGATGGACGGATCTCCGTTCAGGGAATTGACGGCGTTCTGTTTCCGCCGCAGGAGGACGAGGTTGGGCCCGCGACCCGGGCCCAGCCCGCTAAAGTCGTCGTTAAGCAGAGAAGAGGAAAATTGTTGGAAACAGCATGTTGGATGCTTGGAACCTTTGGACAGAATTCTAGATTCACCTCTTGTCAATAA 1344 0.5149 MDRRIYGVTFLLLFLLPTLTFSLPQGQINSNSILVALLDSHYTEVAELVEKAMLLQTLENTVMKHNITIFAPRNEALERNLDADFKRFLLEPRNLPSLQTLLMSHIVPSRIIQPGSNPTRIKTLAPNHHLTLQAPNNKHNISHWIVDSSRVTHPGSVTRPDGVIHGIDSLLIPRSVQDAFNRRRSLTSIAAVKPEPAPEVDPRTHRLKKPAPPQKPGSPPALPIYDAMAPGPSLAPAPAPGPGGPRHHFNGERQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGSPEQIMYYHLIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVTAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPPQEDEVGPATRAQPAKVVVKQRRGKLLETACWMLGTFGQNSRFTSCQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00992 447 SMART fasc_3 68 174 IPR000782 -
Cca04g00992 447 SMART fasc_3 296 401 IPR000782 -
Cca04g00992 447 Gene3D FAS1 domain 249 401 IPR036378 -
Cca04g00992 447 Gene3D FAS1 domain 34 174 IPR036378 -
Cca04g00992 447 MobiDBLite consensus disorder prediction 212 226 - -
Cca04g00992 447 SUPERFAMILY FAS1 domain 32 174 IPR036378 -
Cca04g00992 447 Pfam Fasciclin domain 41 173 IPR000782 -
Cca04g00992 447 Pfam Fasciclin domain 280 400 IPR000782 -
Cca04g00992 447 SUPERFAMILY FAS1 domain 234 401 IPR036378 -
Cca04g00992 447 ProSiteProfiles FAS1/BIgH3 domain profile. 29 171 IPR000782 -
Cca04g00992 447 ProSiteProfiles FAS1/BIgH3 domain profile. 255 383 IPR000782 -
Cca04g00992 447 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 447 - -
Cca04g00992 447 MobiDBLite consensus disorder prediction 193 250 - -
Cca04g00992 447 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 447 IPR044654 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00992 Cca-Chr4 10766374 10770582 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00992 - - gmx:100790599 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00684 10 7625425 7628949 Cca04g00992 04 10766374 10770582 PCT