Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00680 ATGGAGTTTCACTTTCATCTAAAGTTCAACCATCTTTTGTGCTTATTCATCCTTATCCTTTCATCAGTCCACGCTCAAGCTTCTAGCTTCGGATACTGTGATGATGTAAACTATGATGTGAAGGTGTCTGGAGTTGAAATTAAACCAGACCCTGTTGTGCGTGCTAGGCCTGTCACCTTTAAGATTTCAGCTGATACTGGTGAAGCTATTTATGGTGGAAAGTGGGTAATTTCAGTTGCATACTTTGGCTTCGTTGTCCATAATGAAATCCGTGATTTTTGTGAGGAATTATCTTGTCCTGTTGCTAGTGGCAATTTTGTGGTTGCTCATAGCCAAAAATTGCCTGCATTTGCCCCGCCGGGCACCTACACCGTAGAGATGACACTAAAAAATGAGAAGAACGAGGCATTAACTTGCATCACCTTTAAATTCAAAATCGTTTTTGGATCTTTGGTGTGTGATGTATGA 468 0.4081 MEFHFHLKFNHLLCLFILILSSVHAQASSFGYCDDVNYDVKVSGVEIKPDPVVRARPVTFKISADTGEAIYGGKWVISVAYFGFVVHNEIRDFCEELSCPVASGNFVVAHSQKLPAFAPPGTYTVEMTLKNEKNEALTCITFKFKIVFGSLVCDV 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00680 155 SMART pgtp_13 30 144 IPR003172 -
Cca10g00680 155 CDD PG-PI_TP 30 144 IPR033917 GO:0032366
Cca10g00680 155 Gene3D - 29 149 - -
Cca10g00680 155 SUPERFAMILY E set domains 27 147 IPR014756 -
Cca10g00680 155 PANTHER NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED 7 150 IPR039670 -
Cca10g00680 155 Pfam ML domain 28 146 IPR003172 -
Cca10g00680 155 PANTHER LEGUMINOSIN GROUP578 SECRETED PEPTIDE 7 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00680 Cca-Chr10 7567007 7570066 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00680 - - gmx:100818265 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00680 10 7567007 7570066 Cca10g00680 10 7567007 7570066 ECH
Cca10g00680 10 7567007 7570066 Cca04g00986 04 10659921 10663974 PCT