Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00662 ATGGTCTCTGAAGTCACCAAAGGTTGGCAATGGTTAATGGCCTTGCCTAGCGTGTTTAGTGCTAAAGTTATGGACACGATGTCACAACTAAAGAAAGTTGGAAAAGAAGATCCAAGAAGGGTGGTTCATTCTTTGAAAGTGGCACTTGCCATCACCTTAGTTTCTTTATTTTACTATGTTAAGCCTCTTTACAATGGTTTTGGTTCATCTGCAATGTGGGCAGTTTTCACTGTCATTGTTGTCTCCGAATTCTCCCAATTTGATTGTGTGACACATGCAGGAGCAACGTTAGGAAAAGGTTTTAATAGAGGTTTTGCAACATTTTTAGCTGGTGCCATGGGGCTTGGATCTTATTACATGGTGAATTCAATGTCAATGGGACATATAGTGGAACCTATACTACTTGGAGCCTTAATTTTTCTAATAACTGCAGGAGTCACCTATTTTCGATTTTTGCCTCAAATGAAAGCGAGATATGATTATGGGTTGCTGGTGTTTATTTTGACATTTTGCATGGTGTCTGTTTCAAGCTACAGAGACTGCGAGATATTAGACATTGCACTGAAAAGAGTAATCACAATCCTTACAGGTGGATTAATTTCTATATCAGTCAGCATTTTTGTGTTACCCGTATGGGCCGGTGGCGATCTTCATAATCTTGAGTCAAAAAATATTGAAAAATTAGGCAATTTTTTAGAAGGTTTTGGAGAGGAATATTTCGGGACATCAGAGGTTGGAGATTCAAACAAATCGTTTTTGCAAGGATATAAAAGTGTTCTTAACTCAAAACAAGTTGAAGAAAATTTGGCCAATTTTGCGAGGTGGGAACCCTGTCATGGTGGCTTCAGATATGGTCATCCATGGCAACAATACTTGAAGATTGGAAACCTGTCAAGACAGTGTGCCTATCGTATTGATGCTCTTAATGGTTTTCTTAACTCTACCAAGACACTAATAGAAATCAGAAGCAAAATACAAGAGCCATGCATGAAGATGAGCACAGAAACAGGAAAAGCTTTAAAGAAATTAGCAGTGGCAATACATAACATGATTCCACCATCTTCTGTAGACACTCACATTGCCAAATCTAAGGTTGCTGCTACTAGCCTCAGATCCATTATTAAGACAGGATTGTGGGAAGAGACCAATCTCTTTGATGTTATTCCTGTTTTGACTGTGGCTTCTCTGTTGGTTGATGTGGTTTCTTGCACTGAGAGATTAGCAGAGTCAATACAAGAATTAGCCACCCTAGCAAAATTTGAGAACAAAAAGCACCCAACGAGTCCTCGCCATGAGGAAACTCCACAACAACACAACAGTGGACCACATCATGTTATTGCTATTAATTAA 1350 0.3904 MVSEVTKGWQWLMALPSVFSAKVMDTMSQLKKVGKEDPRRVVHSLKVALAITLVSLFYYVKPLYNGFGSSAMWAVFTVIVVSEFSQFDCVTHAGATLGKGFNRGFATFLAGAMGLGSYYMVNSMSMGHIVEPILLGALIFLITAGVTYFRFLPQMKARYDYGLLVFILTFCMVSVSSYRDCEILDIALKRVITILTGGLISISVSIFVLPVWAGGDLHNLESKNIEKLGNFLEGFGEEYFGTSEVGDSNKSFLQGYKSVLNSKQVEENLANFARWEPCHGGFRYGHPWQQYLKIGNLSRQCAYRIDALNGFLNSTKTLIEIRSKIQEPCMKMSTETGKALKKLAVAIHNMIPPSSVDTHIAKSKVAATSLRSIIKTGLWEETNLFDVIPVLTVASLLVDVVSCTERLAESIQELATLAKFENKKHPTSPRHEETPQQHNSGPHHVIAIN 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00662 449 PANTHER ALUMINUM ACTIVATED MALATE TRANSPORTER FAMILY PROTEIN 11 427 - -
Cca10g00662 449 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 11 427 - -
Cca10g00662 449 MobiDBLite consensus disorder prediction 421 438 - -
Cca10g00662 449 MobiDBLite consensus disorder prediction 421 449 - -
Cca10g00662 449 Pfam Aluminium activated malate transporter 32 415 IPR020966 GO:0015743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00662 Cca-Chr10 7256420 7258231 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00662 22 418 Miscellaneous Gene Families AT1G08440 50.124 6.75e-144 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00662 - - gmx:100787221 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00662 10 7256420 7258231 Cca10g00662 10 7256420 7258231 ECH
Cca10g00662 10 7256420 7258231 Cca04g00973 04 10370150 10402660 PCT