Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00651 ATGATTTCACCGCAAACTGAACAATCCCTCGCTTCGATCCTCCTTCTCCTCTTCCTCGCGCTGTTGCACAACCCATTCCAAATCATGGCCCTCGCTCATCAGAATCAAAACCCTAATTCAACCCCAATCCTCGTCCGCCAGCTGCTCGACCCCGCAAAACCCTACCTCAGCCGCCGCCTCCAGCCTTCTGACCACTACCGCCTCCTCAAATCCAACGTCGACGCGTTAAACCTAATCCAGGTCGGGCTCACGCTCTCCGACGCTCGCGGCAACCTCCCCCGCCTCGGCGCCGCCGGGAACCGCTTCATTTGGGAGTTCAACTTCCGCGATTTCGACGCAGAGCGCGACGCCCACGCGCCGGACTCCGTGGACCTCCTCCGCCGGCAGGGGATCGACTTCCGGCGCAACGCGGCGGAAGGCGTGGAGTCACAGCGGTTCGCGGAGCTGATGATGTCGTCGGGGCTTGTGTGCAACGAGGCGGTGAGCTGGGTGACGTTTCACAGCGCGTATGATTTCGGGTACTTGGTTAAGATCCTGACCCGACGGAGTCTGCCCCATGGGCTTGAGGAATTTCTGAAGATTTTGAGAGCGTTTTTCGGGAATAACGTTTATGACATTAAGCACATGATGCGCTTCTGCGACACGCTCTATGGTGGTTTGGACCGGCTCGCCCGAACCCTCAATGTGGACCGGGCCGTCGGAAAGTGCCATCAGGCCGGGTCGGATAGTCTGCTGACGTGGCATGCGTTTCAGAAGATGAGGGATGTTTATTTCGTGAAGGATGGGCCCCACAAACATGCCGGGGTTTTGTTTGGCTTGGAACTCGTCAGCTGA 834 0.5827 MISPQTEQSLASILLLLFLALLHNPFQIMALAHQNQNPNSTPILVRQLLDPAKPYLSRRLQPSDHYRLLKSNVDALNLIQVGLTLSDARGNLPRLGAAGNRFIWEFNFRDFDAERDAHAPDSVDLLRRQGIDFRRNAAEGVESQRFAELMMSSGLVCNEAVSWVTFHSAYDFGYLVKILTRRSLPHGLEEFLKILRAFFGNNVYDIKHMMRFCDTLYGGLDRLARTLNVDRAVGKCHQAGSDSLLTWHAFQKMRDVYFVKDGPHKHAGVLFGLELVS 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00651 277 Gene3D - 47 275 IPR036397 GO:0003676
Cca10g00651 277 SUPERFAMILY Ribonuclease H-like 52 272 IPR012337 -
Cca10g00651 277 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED 53 275 - -
Cca10g00651 277 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 53 275 IPR039637 GO:0004535|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00651 Cca-Chr10 7133273 7134217 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00651 K12581 - gmx:100817875 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00651 10 7133273 7134217 Cca10g00651 10 7133273 7134217 ECH
Cca10g00651 10 7133273 7134217 Cca04g00956 04 10186681 10189984 PCT