Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00956 ATGGGCGTGTCCACCGAAGAACCGAACCCGGTCGCCATCCGCGAGGTTTGGGGCTCCAATCTAGAATCGGAGTTCCAACTCATCGGGGAACTCATCGATCGCTTCCCTTTCATCTCCATGGACACGGAATTCCCCGGCGTGATTTTCCGCCCGCACGTGGACCCCACCAAACCCTACAGCCACCGCAGCAAGCGCCCCTCCGACCACTACCGCCTCCTCAAGTCCAACGTGGACGCGCTCAACCTCATCCAGGTCGGCCTCACGCTCTCCGACGCCGCCGGAAACCTCCCCGACGTCGCCGGGACCCGCTGCATCTGGGAGTTCAACTTCCGCGACTTCGACGCCGCGCGTGACCGCTACGCGCCGGACTCCGTGGCGCTGCTCCGGCGGCAGGGGATCGACTTCGAGCGCAACGCCGCCGAGGGCGTGGACTCGTCGCGGTTCGCGGAGCTTGTGATGTCGTCGGGGCTGGTGTGCAACGACGGCGTGAGCTGGGTGACGTTCCACAGCGCCTACGATTTCGGGTACTTGGTTAAGATCTTGACCCGGCGCGATTTGCCGACCCGGTTGGAGGAGTTTCTGGAAGCCGTGAGGATATTCTTTGGGGAGAACGTTTACGATGTGAAGCACATGATGAGGTTCTGCGACACGCTCTATGGCGGCTTGGACCGCGTTGCACGGACGCTTAACGTGGACCGCGCCGTGGGGAAGTGCCACCAGGCCGGGTCAGACAGCTTGCTGACGTGGCACGCCTTTCAGAAGATTGTTGACACTTATTTTGTTAAGGATGAGCACCAGAAACATGCTGGTGTGTTGTATGGATTAGAGGTTTTCTGTTAA 840 0.606 MGVSTEEPNPVAIREVWGSNLESEFQLIGELIDRFPFISMDTEFPGVIFRPHVDPTKPYSHRSKRPSDHYRLLKSNVDALNLIQVGLTLSDAAGNLPDVAGTRCIWEFNFRDFDAARDRYAPDSVALLRRQGIDFERNAAEGVDSSRFAELVMSSGLVCNDGVSWVTFHSAYDFGYLVKILTRRDLPTRLEEFLEAVRIFFGENVYDVKHMMRFCDTLYGGLDRVARTLNVDRAVGKCHQAGSDSLLTWHAFQKIVDTYFVKDEHQKHAGVLYGLEVFC 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00956 279 Pfam CAF1 family ribonuclease 16 143 IPR006941 -
Cca04g00956 279 SUPERFAMILY Ribonuclease H-like 6 276 IPR012337 -
Cca04g00956 279 Gene3D - 2 278 IPR036397 GO:0003676
Cca04g00956 279 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED 8 278 - -
Cca04g00956 279 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 8 278 IPR039637 GO:0004535|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00956 Cca-Chr4 10186681 10189984 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00956 K12581 - gmx:100500357 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00956 04 10186681 10189984 Cca04g00956 04 10186681 10189984 ECH
Cca10g00651 10 7133273 7134217 Cca04g00956 04 10186681 10189984 PCT