Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00632 ATGACCGAGGTCCTCCACTCCCCACCCCAATTTGCTTCTTCTTCATCACCAACAAAGACAAGGACAACCTCAACCACCTCTAACCCTTTCTCTTCATTCTCTCGCTATGCTTTTCTCCGACCACACCTCTCTCTCTTCGCTCTTCTCCTGACCCTTCTCAGGAAATCCTTCCTTCCTGCTCGCACTAACCTCTCCCACATGGACATGGACATTGGCTCCCCAACTAACGTGCGCCATGTTGCGCATGTCACCTTTGACAGGTTCAACGGCTTCTTGGGCTTGCCCGTTGAGTTCGAACCTGAAGTCCCCAGAAGACCTCCTAGTGCTAGTGCATCTGTTTTTGGAGTTTCGACAGAATCCATGCAGTTGTCGTATGATTCAAGAGGGAACAGTGTGCCAACGATTCTGCTCTTGATGCAAAGGCATCTGTATGCTCAAGGAGGGTTGCAGGTGGAGGGGATTTTCAGAATTAACGCGGACAATGGTCAAGAGGAACATGTTAGGGATCAATTGAATTTGGGAGTGGTCCCAGAAGGCATTGATGTACATTGTTTGGCAGGGTTAATTAAGGCTTGGTTTAGGGAACTTCCAACGGGCATTCTGGATTCAATATCCCCAGAGCAGGTCATGCAATGCCAGACTGAGGAGGAATGCGCTGAACTAGTGAGGAATTTACCTCATACCGAAGCTTCACTCTTAGACTGGGCCATCAATCTGATGGCTGATGTTGTCCAACAAGAACATCTTAATAAGATGAATGCACGCAACATTGCCATGGTTTTTGCACCAAACATGACTCAGATGGCAGACCCTTTCACTGCTTTGATGTATGCAGTTCAAGTAATGAACTTCTTGAAGACACTCATATTAAGGACTCTGCGGGAAAGAAAGGATTCTGTGGTAGAACCTTATCCTAGATATTATTTAAAACCTTCTGATGGTAATGGAGACCATAGACTTTTGGAGTCCTTTCAGCTAGAGACTCCAGCAGAAAAAGAAGAGTCTCAGGAAAACTTTGTTCTAGAGAAAATTGCCTTAGAGTGTTCCCCTGAATCACTCCAAAACATCTCAACTGGAGGGGAATCTGGCAGTTTGACAAACACTTCTGAGAATCTTGTTTGCAATGAGGATTTGTATTGTGAGTTTCCACCCGTAGGAAACATGGGGAAGGGTAAAACTGGTCAATCAAGTAAGTCAAATGCTAGAAAAGAGTCCAAAAAGACCAAAGGCAGCAACCTGTGA 1242 0.4557 MTEVLHSPPQFASSSSPTKTRTTSTTSNPFSSFSRYAFLRPHLSLFALLLTLLRKSFLPARTNLSHMDMDIGSPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRPPSASASVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYAQGGLQVEGIFRINADNGQEEHVRDQLNLGVVPEGIDVHCLAGLIKAWFRELPTGILDSISPEQVMQCQTEEECAELVRNLPHTEASLLDWAINLMADVVQQEHLNKMNARNIAMVFAPNMTQMADPFTALMYAVQVMNFLKTLILRTLRERKDSVVEPYPRYYLKPSDGNGDHRLLESFQLETPAEKEESQENFVLEKIALECSPESLQNISTGGESGSLTNTSENLVCNEDLYCEFPPVGNMGKGKTGQSSKSNARKESKKTKGSNL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00632 413 PANTHER MKIAA1688 PROTEIN 1 397 IPR044785 GO:0005096
Cca10g00632 413 SMART PBD_5 71 105 IPR000095 -
Cca10g00632 413 CDD RhoGAP 133 289 - -
Cca10g00632 413 Pfam P21-Rho-binding domain 70 97 IPR000095 -
Cca10g00632 413 PANTHER PAK-BOX/P21-RHO-BINDING DOMAIN RHO GTPASE ACTIVATING PROTEIN 1 397 - -
Cca10g00632 413 ProSiteProfiles Rho GTPase-activating proteins domain profile. 116 301 IPR000198 GO:0007165
Cca10g00632 413 SMART RhoGAP_3 130 293 IPR000198 GO:0007165
Cca10g00632 413 ProSiteProfiles CRIB domain profile. 71 84 IPR000095 -
Cca10g00632 413 MobiDBLite consensus disorder prediction 397 413 - -
Cca10g00632 413 Gene3D Rho GTPase activation protein 104 299 IPR008936 GO:0007165
Cca10g00632 413 SUPERFAMILY GTPase activation domain, GAP 111 290 IPR008936 GO:0007165
Cca10g00632 413 MobiDBLite consensus disorder prediction 1 28 - -
Cca10g00632 413 MobiDBLite consensus disorder prediction 385 413 - -
Cca10g00632 413 CDD CRIB 69 109 - -
Cca10g00632 413 Pfam RhoGAP domain 133 267 IPR000198 GO:0007165
Cca10g00632 413 Gene3D CRIB domain 65 101 IPR036936 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00632 Cca-Chr10 6922562 6926257 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00632 - K20642 gmx:100776004 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00632 10 6922562 6926257 Cca10g00632 10 6922562 6926257 ECH
Cca10g00632 10 6922562 6926257 Cca04g00931 04 9898753 9907561 PCT