Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00931 ATGACCGAGGTGCTCCAtttctcttcctcttcgtctccttccacttcctcCGACGGCATTCTCCAGGAACCGCCCTCTCAAGCGCCGGTCGCCGCCACCACGCAGCAAGACCTCTCTCTTCTCGCCATTCTCGTCACCCTTTTCAGGAAATCCTTGATTGCTTGCAAGAGTGAGGGGAGGAGGGGCCTCTGCGCCATGGACATTGGTTGGCCCACTAACGTGCGCCATGTTGCGCATGTCACCTTCGACAGGTTCAATGGCTTCTTGGGCTTGCCTCGTGAGTTCGAACCTGAAGTCTCCACGAGGCCTCCCAGTGCTAGTGCAACTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTATCATATGACACAAGAGGGAACAGTGTGCCGACCATACTTCTACTTATGCAAAGGCACTTGTATGCTCTCGGAGGGTTGCAGGCAGAGGGGATTTTCAGAATTAATGCAGACAATAGCCAAGAGGAGTATGTTAGGGATCAATTAAATAGGGGATTGGTCCCAGAAGATGTTGATATACATTGTTTGGCAGGACTAATTAAGGCTTGGTTTAGGGAACTACCTACTGGTATTCTGGATTCTTTATCACCAGAGCATGTTATGCAATGCCAGACCGAAGAGGATTGTGCTGAACTGGCGAGGCAGCTACCTCACACGGAATCTTCCCTCTTGGACTGGGCTATCAATCTCATGGCTGATGTGGTCCAAGAAGAACACCTGAATAAGATGAATGCTCGCAACATTGCCATGGTTTTTGCACCAAACATGACTCATATGGCAGACCCTTTGACTGCATTGATGTATGCAGTTCAAGTCATGAACTTCCTGAAGACACTGACATTAAGGACACTGCGAGAAAGAAAGGATTGTGTGGCAGAATTATCTCCTGGATCTTGTTTAGAGCCTTCTGATGAAAACGGGGACCACAGTCTTTTGGAGTCCTGCCAGCAAGATGATGTAGACACAGAAAATGAAGAAGAAGCAGGGGAAACCTTT 1014 0.4694 MTEVLHFSSSSSPSTSSDGILQEPPSQAPVAATTQQDLSLLAILVTLFRKSLIACKSEGRRGLCAMDIGWPTNVRHVAHVTFDRFNGFLGLPREFEPEVSTRPPSASATVFGVSTESMQLSYDTRGNSVPTILLLMQRHLYALGGLQAEGIFRINADNSQEEYVRDQLNRGLVPEDVDIHCLAGLIKAWFRELPTGILDSLSPEHVMQCQTEEDCAELARQLPHTESSLLDWAINLMADVVQEEHLNKMNARNIAMVFAPNMTHMADPLTALMYAVQVMNFLKTLTLRTLRERKDCVAELSPGSCLEPSDENGDHSLLESCQQDDVDTENEEEAGETF 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00931 338 SMART RhoGAP_3 127 290 IPR000198 GO:0007165
Cca04g00931 338 ProSiteProfiles Rho GTPase-activating proteins domain profile. 113 290 IPR000198 GO:0007165
Cca04g00931 338 PANTHER PAK-BOX/P21-RHO-BINDING DOMAIN RHO GTPASE ACTIVATING PROTEIN 10 333 - -
Cca04g00931 338 Gene3D Rho GTPase activation protein 101 295 IPR008936 GO:0007165
Cca04g00931 338 Pfam RhoGAP domain 130 264 IPR000198 GO:0007165
Cca04g00931 338 CDD CRIB 66 106 - -
Cca04g00931 338 Gene3D CRIB domain 65 100 IPR036936 -
Cca04g00931 338 SUPERFAMILY GTPase activation domain, GAP 108 285 IPR008936 GO:0007165
Cca04g00931 338 CDD RhoGAP 130 285 - -
Cca04g00931 338 MobiDBLite consensus disorder prediction 324 338 - -
Cca04g00931 338 Pfam P21-Rho-binding domain 67 94 IPR000095 -
Cca04g00931 338 ProSiteProfiles CRIB domain profile. 68 81 IPR000095 -
Cca04g00931 338 MobiDBLite consensus disorder prediction 301 338 - -
Cca04g00931 338 PANTHER MKIAA1688 PROTEIN 10 333 IPR044785 GO:0005096
Cca04g00931 338 SMART PBD_5 68 102 IPR000095 -
Cca04g00931 338 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00931 Cca-Chr4 9898753 9907561 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00931 - K20642 ccaj:109798318 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00931 04 9898753 9907561 Cca04g00931 04 9898753 9907561 ECH
Cca10g00632 10 6922562 6926257 Cca04g00931 04 9898753 9907561 PCT