Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00630 ATGGCATCCTCTTCTTTCTTCTTCACTTTCCTATTCCTGCTTCTCACTATTTCCGATTTATTTGTGCAAACCTGTGGACTCAATTTTGGAATAAACTACGGGCAAAAGGCCAACAATCTTCCATCTCATTCTCGTGTGGCTTCTCTCATAAACTCTCTGAATGTCACCAGAATCAAACTCTATGATGCTGATCCGAATGTTCTGTCTGCATTCTCCAATTCAGATGTGGAATTCATTATAGGACTTGAAGACGAGAGTCTGCAGAGCATGAGGGACCCTTCCAAGGCTCAAAACTGGATTCAAAACCATGTTCAGCCTTACATTTCACAGACCAAAATCACATGCATAACTGTAGGAAATGAGGTCTTCAACTACAATGATACTCAGCTCTCAGCAAATCTCCTCCCAGCAATGCAAAGTGTGTACAATGCCCTTGTTAGTCTTGGATTAGCACAAGAAGTTACTGTTACAACTGCTCATTCTTTCAACATTTTAGCCACATCCTTTCCTCCTTCATCTGGTGCTTTCAGGCAAGATCTGATACAATATATTCAGCCCCTCCTTAACTTTCATGCTCAAATCAAATCACCCTTCCTCATTAATGCTTACCCCTTTTTTGCTTACAAGGATAACCCCGACCAAATTTCCTTAAGTTATGTGCTGTTTCAGCCAAATCCAGGGTCCACGGATCCATATACCAATTTGCATTATGATAACATGTTGTATGCTCAAATTGACGCTGTCTATGCTGCCATCAAAGCACTGGGACATACTGATATTGAAGTCAGGATTTCAGAGACTGGTTGGCCTTCTAAGGGCGACCCTGATGAGGTTGGAGCCACACCAGAGAATGCAGAAATATATAATAGTAATTTGTTGAAGAGAATAGAGCAGAAGCAAGGCACTCCTGCAAAGCCATCAGTTCCAATTGATATTTTTGTCTTTGCACTTTTCAATGAGAATATGAAGACTGGTCCTCTATCAGAGAGAAACTATGGCCTTTATTATCCTGATGGTACCCCAGTTTATAACATTGGATTACAAGGCTATCTCCCAGAAATGGTTATAGAGTCCAAATCTAACGCTTTGTCCATCAATTTTCTCATTTATATATGTACGTGCTTGATGCTCACTTGGGAGCTTTCAAGACAGTGA 1155 0.4078 MASSSFFFTFLFLLLTISDLFVQTCGLNFGINYGQKANNLPSHSRVASLINSLNVTRIKLYDADPNVLSAFSNSDVEFIIGLEDESLQSMRDPSKAQNWIQNHVQPYISQTKITCITVGNEVFNYNDTQLSANLLPAMQSVYNALVSLGLAQEVTVTTAHSFNILATSFPPSSGAFRQDLIQYIQPLLNFHAQIKSPFLINAYPFFAYKDNPDQISLSYVLFQPNPGSTDPYTNLHYDNMLYAQIDAVYAAIKALGHTDIEVRISETGWPSKGDPDEVGATPENAEIYNSNLLKRIEQKQGTPAKPSVPIDIFVFALFNENMKTGPLSERNYGLYYPDGTPVYNIGLQGYLPEMVIESKSNALSINFLIYICTCLMLTWELSRQ 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00630 384 Pfam Glycosyl hydrolases family 17 30 345 IPR000490 GO:0004553|GO:0005975
Cca10g00630 384 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 8 363 IPR044965 GO:0004553|GO:0005975
Cca10g00630 384 SUPERFAMILY (Trans)glycosidases 29 345 IPR017853 -
Cca10g00630 384 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 14 8 363 - -
Cca10g00630 384 Gene3D Glycosidases 28 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00630 Cca-Chr10 6906266 6911360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00630 79 379 Glycoside Hydrolase AT2G27500 64.901 8.67e-153 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00630 - - gmx:100786020 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00630 10 6906266 6911360 Cca10g00630 10 6906266 6911360 ECH
Cca10g00630 10 6906266 6911360 Cca04g00924 04 9855426 9860707 PCT