Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00924 ATGAAAAGTTTTATTAGGTGGCCAACTTTTGCATCATCTCAGTTTCTGTGCCTACAAGCGTGGTGCTCTCAGTTGTGGTCTATGGCCATCATGATCAGATCCTTCTCCTTCATGTCAATGCTTTTGTTTCTTCTCACCGTTTCGGATATGTTTGTGCCAATCCATGGCGATGGCTTTGGAATCAACTATGGACAGATAGCCAACAATTTACCTCTTCCATCTCAAGTGGCTGTTCTTATAAAATCCATGAACGTGAGTAGGATCAAACTCTATGATGCTGATCCAAATGTTCTAGTAGCCTTCTCCCAATCCAATGTGGAATTCGTTATAGGACTTGGAAATGAGTTCCTACAGAACATGACAAATCTATCCAAAGCACAAACTTGGATTCAACAGCATGTTCAACCTTACCTCTCACAAACAAAAATCACTAGCATCACTGTGGGAAATGAGGTTTTCAATAGCAATGATACTCAACTAATGCTGAACCTCCTCCCAGCAATGCAAAATGTGCATGATGCCCTTGTTAATCTTGGACTAGACCAACAAGTTTCTGTCACCACTGCACATTCCTTCAACATAATATCCAATTCCTACCCTCCTTCATCTGGTGCTTTTAGGCAAGATCTTGTGCAATACATCCAACCCCTTCTAGATTTTCATGCTCAAATCAACACACCTTTCCTAATCAATGCATACCCTTTCTTTGCATACAAAGACAACCCAAATGAAGTGTCCTTAAACTACGTACTTTTTCAACCAAACCAAGGCTTGGTTGATCCAAACACTAACTTGCATTATGACAACATGTTGTATGCTCAAATTGATTCTGTCTATGCTGCCATCAAAGCAATGGGGCATAGTGATATTCAAGTGAGGATTTCTGAGACTGGTTGGCCTTCTAGTGGTGACCCAGAAGAGGTTGGAGCCACACCACAGAATGCAGCATTGTATAATGGTAACTTGCTCAAAAGAATAGAGCAGAGACAAGGCACTCCTGCAAATCCTTCTGTTCCAATTGACATATATGTCTTTGCACTTTTTAATGAGAATTTGAAGCCTGGTCCAGCATCAGAGAGAAACTATGGCCTTTACTATCCTAATGGTGTTCCAGTTTATAACATTGGATTGAAGGGTTATCTCCCACAGATGCCTATGGCAGCTAAATCCAATACTTTGTGTGTCAATTTTCTTGCATGTATAGTTACATGCTTGATCTTTGCTTTGGAGCTTTCAAGATGA 1242 0.4058 MKSFIRWPTFASSQFLCLQAWCSQLWSMAIMIRSFSFMSMLLFLLTVSDMFVPIHGDGFGINYGQIANNLPLPSQVAVLIKSMNVSRIKLYDADPNVLVAFSQSNVEFVIGLGNEFLQNMTNLSKAQTWIQQHVQPYLSQTKITSITVGNEVFNSNDTQLMLNLLPAMQNVHDALVNLGLDQQVSVTTAHSFNIISNSYPPSSGAFRQDLVQYIQPLLDFHAQINTPFLINAYPFFAYKDNPNEVSLNYVLFQPNQGLVDPNTNLHYDNMLYAQIDSVYAAIKAMGHSDIQVRISETGWPSSGDPEEVGATPQNAALYNGNLLKRIEQRQGTPANPSVPIDIYVFALFNENLKPGPASERNYGLYYPNGVPVYNIGLKGYLPQMPMAAKSNTLCVNFLACIVTCLIFALELSR 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00924 413 Pfam Glycosyl hydrolases family 17 60 375 IPR000490 GO:0004553|GO:0005975
Cca04g00924 413 Gene3D Glycosidases 58 381 - -
Cca04g00924 413 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 14 38 391 - -
Cca04g00924 413 SUPERFAMILY (Trans)glycosidases 59 376 IPR017853 -
Cca04g00924 413 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 38 391 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00924 Cca-Chr4 9855426 9860707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00924 109 408 Glycoside Hydrolase AT2G27500 66.445 1.92e-156 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00924 - - ccaj:109798347 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00924 04 9855426 9860707 Cca04g00924 04 9855426 9860707 ECH
Cca10g00630 10 6906266 6911360 Cca04g00924 04 9855426 9860707 PCT