Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00625 ATGGTGATTCCAATAGTAGTGGCACTGGTGGTGATTCTCACGGGGTGGGCTTACAAGGCCATAAAGCCTCCACCACCCAAAATATGTGGATCTGTAGGGGGTCCTGAAGTCACTTGCCCCAGAGTGAAGCTCAGTGATGGGAGACATTTGGCCTATAGAGAATTTGGTGTTCCCAGGGAAGAAGCTAGGCACAAGATTATTGTCATTCATGGATTTGGCGGTTCCAAAGACACAAATTTGCCTGTTTCTCAAGAACTTATGGAAGAGCATGGGATATATTTCCTCCACTTCGACAGAGCAGGTTATGGTGAGAGTGATCCACATTCATCACGTTCTGTGAAGAGCGAAGCCTATGATATTCAAGAACTAGCTGATAAATTGCAGATTGGTCATAAATTTTATATAACTGGAATATCCATGGGAGGTTACCCTGTTTGGAGCTGCCTAAAATACATTCCACATAGATTGTATGGAGCAGCCATGGTGGCTCCATGTATAAGCTATTGGTGGCCTTCTTTTCCTGATAATCTATTGAGAGAGGCATTTCTGATGCTACCTCATTCAGACCAATGGACTTTCCGAGTTGCACATTATGCCCCTTGGTTATTCTATTGGTGGATCACTCAAAAATGGTTCCCTTCATTCACTTTGACTAGTTTGTTGTCTACTGATGATATGGAGATTGTGAAGAGCTTGCCAAACACTGATCAGGAGAGGATAACACAGCAAGGTGAATATGAATCATTACACAGAGACATTATGATTGCTTTTGGGAAGTGGGAATTTGGCCCAACGGAGATATCAAACCCGTTTCCGGATAATAATGGTTCGGTGCACATGTGGCAAGGTTTTGAAGATAGAATAATTCCCTATATGGTGAATCGTTACATCTCTGAGAAATTGCCGTGGATTCGTTATCACGAGACACAGAAAATCTGCAGATGTTTCTGTCAGGGCACTCAACTTTCTCCAAACCATAATGATCCATTAGATGATTTGCCTGTGGTTTCACCAAGAATCAAACTCAGAGATGGGAGGCACCTTTCATATATTGAGAGAGGAGTCCCCAAAGACATGGCAAAATACAAAGTCATCATTGTGCACGGTTTTGGAAGCTCCAAAGAGATGAATTTTCTGGCACCCCAGGACTTGATAGATGAATTGGGTATATATCTTCTGCAATATGACCGAGCTGGATATGGAGAAAGTGATCCAAACCCAAAACGCTCATTGAAGAGTGAAGCACTTGACATTGAAGAGCTTGCTGATCAGCTACAATTAGGACCACAGTTTTATGTGATTGGAGTCTCAATGGGTTCATATGCTAGCTGGAGTTGTCTAAAGTATTTGCCCCACAGGCTTGCAGGGTTGGCACTGATAGCCCCAGTGATCAATTACCGGTGGCCTTCATTCCCAAAGAGTCTGATAAGGGAGGACTACAGGAGGAAACTTGTCTACTGGTCCATGTGGCTTGCAAATCACTGGCCTAGACTATTGCATTGGTGGGTCACTCAAAAGTGGCTCCCTTCAACTGCTGTCATAGAAAAGAACCCTGCTTTCTTCAATAAAACTGATATAGATATTCTCAAGACAATTCCTGGCTTTCCAATGCTTACCAAGGACAGTTTAAGGGAACAAGTTGTTTTTGACACTCTTCGCCGTGATTGGAAGGTGGCTTTTGGAAAATGGGAATTTGATCCAATGAAGCTAAGTAATCCATTTCCTCAAAATAGAAGTTCGTTTCACATTTGGCATGGCTACGAAGATAAGGTTGTGCCCTCTGAACTCCAGAGATTTGTTTCAGGGAAGCTGCCATGGATACATTATCATGAAGTTCCTGATGGTGGCCACTTAATTATATACTATAGGGGCTTATGTGAGGCCATTTTAAGGGCACTTTTACTAGGACAAGAAAATCTTGCATATAGACCTAAAACACCACCATTATTTGAATCTTAA 1959 0.4252 MVIPIVVALVVILTGWAYKAIKPPPPKICGSVGGPEVTCPRVKLSDGRHLAYREFGVPREEARHKIIVIHGFGGSKDTNLPVSQELMEEHGIYFLHFDRAGYGESDPHSSRSVKSEAYDIQELADKLQIGHKFYITGISMGGYPVWSCLKYIPHRLYGAAMVAPCISYWWPSFPDNLLREAFLMLPHSDQWTFRVAHYAPWLFYWWITQKWFPSFTLTSLLSTDDMEIVKSLPNTDQERITQQGEYESLHRDIMIAFGKWEFGPTEISNPFPDNNGSVHMWQGFEDRIIPYMVNRYISEKLPWIRYHETQKICRCFCQGTQLSPNHNDPLDDLPVVSPRIKLRDGRHLSYIERGVPKDMAKYKVIIVHGFGSSKEMNFLAPQDLIDELGIYLLQYDRAGYGESDPNPKRSLKSEALDIEELADQLQLGPQFYVIGVSMGSYASWSCLKYLPHRLAGLALIAPVINYRWPSFPKSLIREDYRRKLVYWSMWLANHWPRLLHWWVTQKWLPSTAVIEKNPAFFNKTDIDILKTIPGFPMLTKDSLREQVVFDTLRRDWKVAFGKWEFDPMKLSNPFPQNRSSFHIWHGYEDKVVPSELQRFVSGKLPWIHYHEVPDGGHLIIYYRGLCEAILRALLLGQENLAYRPKTPPLFES 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00625 652 PANTHER HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN, EXPRESSED-RELATED 311 647 - -
Cca10g00625 652 Pfam Serine aminopeptidase, S33 61 186 IPR022742 -
Cca10g00625 652 PANTHER ALPHA/BETA HYDROLASE FAMILY PROTEIN 37 309 - -
Cca10g00625 652 SUPERFAMILY alpha/beta-Hydrolases 334 620 IPR029058 -
Cca10g00625 652 SUPERFAMILY alpha/beta-Hydrolases 37 309 IPR029058 -
Cca10g00625 652 PANTHER ALPHA/BETA HYDROLASE FAMILY PROTEIN 311 647 - -
Cca10g00625 652 Gene3D alpha/beta hydrolase 38 312 IPR029058 -
Cca10g00625 652 Gene3D alpha/beta hydrolase 336 624 IPR029058 -
Cca10g00625 652 Pfam Alpha/beta hydrolase family 364 619 IPR000073 -
Cca10g00625 652 PANTHER HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN, EXPRESSED-RELATED 37 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00625 Cca-Chr10 6820640 6827260 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00625 - - pda:103703084 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00625 10 6820640 6827260 Cca10g00625 10 6820640 6827260 ECH
Cca10g00625 10 6820640 6827260 Cca04g00916 04 9751324 9754257 PCT