Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00609 ATGTCATTTTTGCCTCAAGAAAACCATTTTAATCCTATCCTTGATGTAGATTATGGCATCAACGTTGGTGCCCACCTTGTTGGCACAGCTTATGTATGTGGAGAGAGAGGAGGAATCATACTAGAGGATCCATATCACTATGGTGTGTCACTGAATGGAGTGCCAGGACTAGACATTGATATGGAAAAGAAAAGGGTGGATGAGAAATTGAATGAGCTTAGAAAAGAGGGAGCCACAGAACATGCTATTGGATTGGCCATGAAGGACTTGGGTAGTAAAAGAGCAAAGATGTATGGATGGCCAAACACATACGTTTTTACAAAGGCAATGGGAGAAATGGTTGTAGGAACCACAAAGGGAAACGTTAATGTTGTAATTGTACGTCCCACAATCATCACTAGCACTTACAAAGAACCTTTCCCTGGTTGGATTGAAGGTTTAAGAACCATAGACAGCATAATAGTTGCTTATGGTAAAGGAAAATTAACCTCTTTCCTTCTGGATCTCAAGGCAATTTTTGATGTGATACCAGCTGACATGGTAGTGAATGCAATGATAGTGGCAATGGTAGCTCATGCAAAAGAACCTAGTCTTGGTGATATCATATATCATGTGGGTTCCTCTGCTATAAATTCAGTTAGGTACCTTAATCTTCGAGACTATAGCTTAAAATATTTCACAGAAAAACCTTGGATAAACAAGGATGGAAAGCCCGTGAAGGTTGGCAAAGTTAACATACTGAGCAACATGGCTAGCTTCCGCAGATATATGTACATTCGTTACCTGCTTCCCTTAAAGGGACTAGAGGTGGTGAATGCCGCTTCATGCCATTATTTTGAGGAAATGTGTGTTGACTTCAATAGGAAGATACGTACTGTGATGCGATTGGTTGAAATTTACAAGCCTTACTTGTTCTTCAATGGACTATTTGATAATACGAATTCAAAAAAGTTATTATCAATGGCAAGACAAGGTGGGGCAGCAGAGACGGAAATGTTTCAGTTTGACCCAAAAATAATTGATTGGGAGGACTATTTCATGAATGTCCATTTTCCTGGTATCCTCAACTATGTCTTCAAGTGA 1083 0.3961 MSFLPQENHFNPILDVDYGINVGAHLVGTAYVCGERGGIILEDPYHYGVSLNGVPGLDIDMEKKRVDEKLNELRKEGATEHAIGLAMKDLGSKRAKMYGWPNTYVFTKAMGEMVVGTTKGNVNVVIVRPTIITSTYKEPFPGWIEGLRTIDSIIVAYGKGKLTSFLLDLKAIFDVIPADMVVNAMIVAMVAHAKEPSLGDIIYHVGSSAINSVRYLNLRDYSLKYFTEKPWINKDGKPVKVGKVNILSNMASFRRYMYIRYLLPLKGLEVVNAASCHYFEEMCVDFNRKIRTVMRLVEIYKPYLFFNGLFDNTNSKKLLSMARQGGAAETEMFQFDPKIIDWEDYFMNVHFPGILNYVFK 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00609 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 90 207 IPR036291 -
Cca10g00609 360 Pfam Male sterility protein 25 185 IPR013120 -
Cca10g00609 360 Pfam Male sterility protein 261 360 IPR033640 -
Cca10g00609 360 PANTHER FATTY ACYL-COA REDUCTASE 27 358 - -
Cca10g00609 360 PANTHER MALE STERILITY PROTEIN 2-RELATED 27 358 IPR026055 GO:0080019
Cca10g00609 360 Gene3D - 22 241 - -
Cca10g00609 360 CDD FAR_C 259 359 IPR033640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00609 Cca-Chr10 6641458 6643324 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00609 27 359 Acyl Lipid Metabolism Gene Families AT4G33790 58.859 2.64e-143 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00609 K13356 - gmx:100805240 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00609 10 6641458 6643324 Cca04g00903 04 9594046 9598433 PCT