Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00903 ATGGAATTGGGAAACATAATACCCTTCCTCGAGGACAAGAATATTTTGGTCATTGGTGCCGCTGGCTTCCTTGCAAAAATTTTTGTGGAGAAGGTACTGAGAGTGCAACCAAATGTCAAGAAACTTTATCTTCTTTTAAGAGCTACAGATACCAAATCTGCCACTCAACGATTGCAGCATGAGATCATACAAAAGGATTTGTTTAGATTGTTGGAGGAAAATCTTGGAGCAAAGTTCAATAGCTTTGTTTCAGAAAAGTTGACTGTTGTGCCTGGTGACATTTCTCAAGATGACTTGAATTTGAAAGACCCCATTCTACGGGAAGAACTTTGCAGACAAACTCATTGTATAATCAATTTTGCTGCCACAACCAACTTTGAGGAAAGATACGATGTTGCATTGGGTATAAATACATTTGGAGTTAAGCATGTTTTGAACTTCGCCAAAAGTTGTATTAAACTAAAGGTGCTTGTCCACGTGTCAACAGCATATGTATGTGGAGAGAAGGGAGGACAAATATTAGAGGATCCATGCCAGATGGGTGTGTCACTAAATGGAGTGTCAGGATTAGACATTGACTTAGAAAAGAAAATGGTGGAGAACAAATTGTACCAACTTCGACAAGAGGGAGCCACAGAGAATGATGTTAAAATGGCCATGAAGGACTTGGGTATCCAAAGAGCAACTAAGTATGGATGGCCAAACACGTATGTCTTTACAAAGGCACTGGGTGAAATGTTTGTAGAAACTCTAAAGGAAAACATGTCTGTTGTTATTGTACGTCCTACAATAGTTAGCAGCACTTACAGAGAACCTTTCCCTGGGTGGGTTGAAGGAGTAAGGACTATAGACAGTTTCATTGCTGCTTATTGCAAAGGAAAATTAAAATGCTTTCCTGGGGATATCAAGGCAATTTTTGACGTGATACCAGCAGACATGGTGATGAATGCAATAATCATGGCTTTGGTGGCTCATGCAAATCATCCTTGTGATAATATCATATATCATGTGGGTTCCTCTGTTGCAAATCCAATTCGATACCAGAATCTCAAAGACTATGGTGTTAGATATTTCATGGCAAAACCATGGGTAAACAAGAAAGGAAATCCCATCAAGGTTGGCGAAATTACAGTATTCGACAACATAACTAGTTTTCGGAGATACATGTTCGTTCGTTACTTGCTTCCATTTAAGGGATTAGAGCTAGTCAATGCAGTCTTTTTCCAATACTTTCAGGAGACATATCTTGACATTAAAAGGAAGGTCCATGCAATGATGCGGTTGGTTGACCTCTACAAACCCTACTTGTTCTTCAATGGCGTATTTGATAATATGAACACAGAGAAGTTACAAATGGCAGCAAAACAAGGTGGGGTAGAGATGGATTTGTTTTACTTTGACCCAAAAATGATTGAATGGGAGGACTACTTTATGAATGTTCATATTCCTGGTGTTGTCAAGTATGTCCTCAAGTGA 1476 0.3909 MELGNIIPFLEDKNILVIGAAGFLAKIFVEKVLRVQPNVKKLYLLLRATDTKSATQRLQHEIIQKDLFRLLEENLGAKFNSFVSEKLTVVPGDISQDDLNLKDPILREELCRQTHCIINFAATTNFEERYDVALGINTFGVKHVLNFAKSCIKLKVLVHVSTAYVCGEKGGQILEDPCQMGVSLNGVSGLDIDLEKKMVENKLYQLRQEGATENDVKMAMKDLGIQRATKYGWPNTYVFTKALGEMFVETLKENMSVVIVRPTIVSSTYREPFPGWVEGVRTIDSFIAAYCKGKLKCFPGDIKAIFDVIPADMVMNAIIMALVAHANHPCDNIIYHVGSSVANPIRYQNLKDYGVRYFMAKPWVNKKGNPIKVGEITVFDNITSFRRYMFVRYLLPFKGLELVNAVFFQYFQETYLDIKRKVHAMMRLVDLYKPYLFFNGVFDNMNTEKLQMAAKQGGVEMDLFYFDPKMIEWEDYFMNVHIPGVVKYVLK 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00903 491 CDD FAR-N_SDR_e 13 362 - -
Cca04g00903 491 Pfam Male sterility protein 393 491 IPR033640 -
Cca04g00903 491 Gene3D - 7 372 - -
Cca04g00903 491 PANTHER FATTY ACYL-COA REDUCTASE 2 490 - -
Cca04g00903 491 PANTHER MALE STERILITY PROTEIN 2-RELATED 2 490 IPR026055 GO:0080019
Cca04g00903 491 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 341 IPR036291 -
Cca04g00903 491 Pfam Male sterility protein 19 318 IPR013120 -
Cca04g00903 491 CDD FAR_C 391 490 IPR033640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00903 Cca-Chr4 9594046 9598433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00903 110 490 Acyl Lipid Metabolism Gene Families AT4G33790 55.118 1.36e-161 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00903 K13356 - gmx:100788994 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00903 04 9594046 9598433 Cca04g00903 04 9594046 9598433 ECH
Cca10g00609 10 6641458 6643324 Cca04g00903 04 9594046 9598433 PCT