Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00586 ATGGAGGAAGCGAATCCGAACTTGTTGATTTCGAAGTTGAGCGAGGAAGTGAGCGGTCACGTGCAGGTGGTATGGGAAATGGTGAAGGTGCCGTTGGTGGTGCCTCTGTTGAAGCTTTGGGTGTACGTGTGCATGGGAATGGCCATCATGCTCTTCGTGGAGAGGGTGTACATGGGCGTCGTAATCGTGCTCGTCAAACTCTTCTGGAAGAAACCCGAACACCGTTACAACTACAACCCCCTCCAAGACGACGTCGAATCGGGCTCCTCCAATTACCCCATCGTTCTCATCCAAATCCCAATGTTCAACGAAAAAGAGGTTTACAAGGTGTCCATTGGAGCAGCTTGTGGGCTTTCGTGGCCCACTGACCGTCTCGTTATCCAAGTCCTCGACGATTCTACTGATCCTGTCGTTAAGGAAATGGTGGAGCGAGAGTGTGAGAGATGGGCGAGTAAAGGCATAAACATAACGTACCAGGTAAGGGAGAACAGAACGGGGTACAAAGCGGGTGCGTTGAAAGAAGGATTGAAACGAAGCTATGTGAAGCAATGCGAGTACGTGGCCATTTTCGATGCCGATTTCAGGCCCGACCCAAACTTCCTCAGGCGAGGCATTCCCTTCTTGGAGGGTAACCCTCAGATTGCTCTCGTTCAAGGTCGTTGGAGATTTGTTAATGCAGATGAGTGCTTGTTGACAAGAATGCAAGAGATGTCACTGGATTATCATTTCACAGTAGAGCAAGAAGTTGGGTCAGCCACTCATGCTTTCTTTGGTTTCAATGGGACAGCGGGTATATGGAGAATTGCTGCTATTGACGAAGCTGGTGGGTGGAAAGATAGAACAACGGTGGAGGACATGGATCTCGCTGTTCGTGCCAGTCTTAGGGGCTGGAAATTTGTTTACCTTGGAGACCTCCAGGCAAAAAGTGAGCTTCCCAGTACTCTTAGAGCCTTCCGCTTCCAGCAGCATCGATGGTCTTGTGGTCCTGCTAATCTATTCCGCAAAATGGTGATGGAGATAGCAAGGAACAAGAACGTAAACTTTTGGAAGAAAGTTTATGTTATATACAGCTTCTTCTTAGTTCGAAAAATCGTAGCCCACATGGTCACCTTCATCTTCTACTGTGTCGTTCTTCCCTTAACAATTTTGGTCCCTGAGGTGCATGTTCCAATATGGGCTGCTGTTTATATTCCTTCCATCATCACCACCCTCAATTCAGTTGGAACTCCAAGGTCCATTCACCTGTTGTTCTACTGGATCCTCTTTGAGAATGTGATGTCATTGCACCGTACAAAGGCAACCTTGATCGGTCTGCTAGAAGCCGGGAGCGCCAATGAGTGGATCGTTACTGAAAAACTTGGCGACTCTGTCAATAATAGTAAGACCAAGAACAAGACCAATTTCATCAAAGCAATCAGAAAAACTCGATCCAAATTTGGTGAAAGACTTAATCTATTGGAGCTTGGATTTGCTGCCTTCCTCTTCCTCTGTGGATGCTATGACTTCATGTACGGCAAGAACAACTACTTTGTGTACCTCTTCCTTCAGACCATAACCTTCTTAGTCGTAGGATTTGGCTATATTGGCACCATTGTCTAG 1599 0.4703 MEEANPNLLISKLSEEVSGHVQVVWEMVKVPLVVPLLKLWVYVCMGMAIMLFVERVYMGVVIVLVKLFWKKPEHRYNYNPLQDDVESGSSNYPIVLIQIPMFNEKEVYKVSIGAACGLSWPTDRLVIQVLDDSTDPVVKEMVERECERWASKGINITYQVRENRTGYKAGALKEGLKRSYVKQCEYVAIFDADFRPDPNFLRRGIPFLEGNPQIALVQGRWRFVNADECLLTRMQEMSLDYHFTVEQEVGSATHAFFGFNGTAGIWRIAAIDEAGGWKDRTTVEDMDLAVRASLRGWKFVYLGDLQAKSELPSTLRAFRFQQHRWSCGPANLFRKMVMEIARNKNVNFWKKVYVIYSFFLVRKIVAHMVTFIFYCVVLPLTILVPEVHVPIWAAVYIPSIITTLNSVGTPRSIHLLFYWILFENVMSLHRTKATLIGLLEAGSANEWIVTEKLGDSVNNSKTKNKTNFIKAIRKTRSKFGERLNLLELGFAAFLFLCGCYDFMYGKNNYFVYLFLQTITFLVVGFGYIGTIV 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00586 532 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 84 312 IPR029044 -
Cca10g00586 532 PANTHER BNAC09G36340D PROTEIN 16 532 - -
Cca10g00586 532 Pfam Glycosyl transferase family group 2 186 384 IPR001173 -
Cca10g00586 532 SUPERFAMILY Nucleotide-diphospho-sugar transferases 89 373 IPR029044 -
Cca10g00586 532 CDD CESA_CaSu_A2 93 329 - -
Cca10g00586 532 PANTHER - 16 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00586 Cca-Chr10 6400202 6404302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00586 1 532 Miscellaneous Gene Families AT5G22740 76.493 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00586 K13680 - gmx:100788761 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00586 10 6400202 6404302 Cca10g00586 10 6400202 6404302 ECH
Cca10g00586 10 6400202 6404302 Cca04g00876 04 9203882 9209555 ECH