Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00876 ATGGTCGAATCTCAGCCCAAGTTCTTCATCCCAGAGTCGTTCCAGGGAGCGAATTTCGACTTGGCTGCGCAGATTAGAATGGTGTGGGAAGTGATCAAGGCGCCACTCATCGTGCCTCTGCTGAACGTGGGCGTGTACATTTCCCTCGCCATGGCCCTCATGCTCTTCATGGAGAGGGTCTACATGGGCATCGTCATCATCCTCGTTAAACTCTTCTGGAAGAAACCTCACCAGCGTTACAAGTTCGATCCCCTCGAAGAAGACGAGGAACTCGGAAACACCAATTTCCCCGTCGTGCTCGTTCAGATTCCAATGTTCAACGAAAAAGAGGTGTACAAGGTGTCGATTGGGGCAGCTTGTAATCTTTCATGGCCTTCGGACCGTCTCGTGATCCAAGTGCTTGATGATTCTACTGACCCTACAGTGAAGCAAATGGTGGAGACGGAATGCCAGAGATGGGCGAGCAAGGGCATAAACATAGTGTACCAAATCAGAGAAACGAGAGGAGGCTACAAAGCTGGTGCTCTAAAAGAAGGCCTTAAACGTAACTACGTCAAACACTGCGAATACGTGGCTATTTTCGATGCAGATTTCCGTCCTGAGCCTGATTTTCTAAGACGTTCCATTCCTTTCTTGGTTGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTGTGAATTCAGATGAGTGTTTACTAACAAGAATGCAAGAGATGTCATTGGATTACCATTTCACAGTCGAGCAAGAAGTTGGGTCAGCCACTCATGCTTTCTTTGGTTTCAACGGAACTGCTGGTGTGTGGAGAATAGCTGCTATCAATGAAGCTGGAGGGTGGAAAGACAGAACAACAGTGGAAGATATGGACCTTGCTGTTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGGGACCTCCAGGCTAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCATCGATGGTCTTGTGGTCCTGCTAACTTGTTCCGCAAAATGGTGATGGAGATAGTGAGGAACAAGAAAGTGAGGTTTTGGAAGAAAGTGTATGTTATATACAGCTTCTTCTTTGTTCGTAAAATCATAGCCCACATGGTTACCTTCTTCTTCTACTGTGTTGTAATCCCCCTTACAATTTTGATCCCTGAGGTTCATGTTCCAATATGGGGAGCTGTTTACATTCCTTCCGTCATCACCATTCTCAATTCAGTTGGAACACCAAGGTCCATTCACCTTCTGTTCTATTGGATCCTTTTTGAGAATGTAATGTCTTTGCACCGTACCAAGGCAACATTTATAGGTTTGTTAGAATATGGAAGGGCCAATGAATGGGTTGTAACTGAAAAACTTGGTGACTCTGTCGCCAATAATAAGAATAAATCAGGAGATGCTGCCAAGAAGAATAATGTCATCAAGGCCCCCAAAAAGACTCGATCCAAGTTTGTTGAAAGACTCAATTTACTGGAACTTGGATTTGCGGCATTCCTCTTCGTATGTGGATGCTATGATTTTGTGCATGGGAAACACAACTACTTTATCTACCTCTTCCTTCAGACCATTACCTTCTCAATTGTGGGATTTGGCTACGTTGGCACCATTGTGTAA 1626 0.4514 MVESQPKFFIPESFQGANFDLAAQIRMVWEVIKAPLIVPLLNVGVYISLAMALMLFMERVYMGIVIILVKLFWKKPHQRYKFDPLEEDEELGNTNFPVVLVQIPMFNEKEVYKVSIGAACNLSWPSDRLVIQVLDDSTDPTVKQMVETECQRWASKGINIVYQIRETRGGYKAGALKEGLKRNYVKHCEYVAIFDADFRPEPDFLRRSIPFLVGNPDIALVQARWRFVNSDECLLTRMQEMSLDYHFTVEQEVGSATHAFFGFNGTAGVWRIAAINEAGGWKDRTTVEDMDLAVRASLRGWKFLYLGDLQAKSELPSTLRAFRFQQHRWSCGPANLFRKMVMEIVRNKKVRFWKKVYVIYSFFFVRKIIAHMVTFFFYCVVIPLTILIPEVHVPIWGAVYIPSVITILNSVGTPRSIHLLFYWILFENVMSLHRTKATFIGLLEYGRANEWVVTEKLGDSVANNKNKSGDAAKKNNVIKAPKKTRSKFVERLNLLELGFAAFLFVCGCYDFVHGKHNYFIYLFLQTITFSIVGFGYVGTIV 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00876 541 PANTHER - 5 541 - -
Cca04g00876 541 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 377 IPR029044 -
Cca04g00876 541 Pfam Glycosyl transferase family group 2 190 393 IPR001173 -
Cca04g00876 541 PANTHER BNAC09G36340D PROTEIN 5 541 - -
Cca04g00876 541 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 87 316 IPR029044 -
Cca04g00876 541 CDD CESA_CaSu_A2 97 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00876 Cca-Chr4 9203882 9209555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00876 5 541 Miscellaneous Gene Families AT5G22740 81.447 0.0 912
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00876 K13680 - gmx:100802752 1066.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00876 04 9203882 9209555 Cca04g00876 04 9203882 9209555 ECH
Cca10g00586 10 6400202 6404302 Cca04g00876 04 9203882 9209555 ECH