Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00579 ATGGCTTCGGGCCGAGTAGATCTGGACGGAAGGCCCATAAAGCCCATGACCATTTGCATGATCGGCGCCGGTGGGTTCATCGGCTCCCACCTCTGCGAAAAACTAATGTCGGAGACCCCTCACACGGTTCTCGCCTTGGATGTCTACAGCGACAAAATCAAACACCTCTTGGAGCCCCACACGCTTCCTTGGGCCGGTCGCATCCAGTTCCACCGCCTCAACATCAAGCACGATTCGCGCCTCGAGGGCCTCATCAAGATCGCAGATCTGACCATTAATCTCGCTGCTATTTGCACCCCCGCGGATTACAACACGCGCCCCTTGGACACCATTTACAGCAACTTCATCGACGCGCTTCCCGTCGTGAAGTACTGTTCGGAAAACAACAAGCGTCTCATTCATTTCTCTACGTGTGAAGTGTATGGGAAAACGGTTGGGAGCTTTCTCCCCAAAGATAGCCCTCTTCGTAAGGATCCTGCATACTATGTGCTTAAGGAGGATGAGTCTCCTTGTATTTTTGGTTCAATTGAGAAGCAGAGGTGGTCGTATGCCTGTGCTAAGCAGTTGATTGAGAGGCTGATTTATGCTGAGGGTGCTGAAAATGGCTTGGAATTCACAATTGTGAGACCTTTTAATTGGATTGGACCAAGGATGGATTTCATTCCTGGCGTTGATGGGCCAAGTGAGGGTGTTCCCCGTGTTCTGGCCTGCTTTAGCAATAATCTCCTCCGTGGAGAGCCCCTCAAGCTTGTGGATGGTGGCCAATCCCAGAGGACTTTCGTGTATATTAAGGATGCTATTGAAGCTGTCTTATTGATGATTGAAAATCCTGCAAGGGCCAATGGGCATATTTTTAATGTGGGTAACCCAAACAATGAGGTTACAGTTAGGCAGCTTGCTGAAATGATGACTCAGGTTTATTCAAAGGTAAGCGGAGAAGCATCTCTAGAAAAACCCACTATTGATGTGAGCTCCAAAGAATTTTATGGTGAGGGATATGATGATAGTGACAAGAGAATTCCTGACATGACCATAATTAATAGGCAGCTTGGCTGGAATCCTAAGACCTCACTTTGGGACCTGCTTGAGTCCACTCTCACCTATCAGCACAGGACTTATGCTGAAGCCATTAAGAAAGTCATTGCAAAGCCAGTGGCAAGTTAA 1164 0.482 MASGRVDLDGRPIKPMTICMIGAGGFIGSHLCEKLMSETPHTVLALDVYSDKIKHLLEPHTLPWAGRIQFHRLNIKHDSRLEGLIKIADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTVGSFLPKDSPLRKDPAYYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGVDGPSEGVPRVLACFSNNLLRGEPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTQVYSKVSGEASLEKPTIDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQHRTYAEAIKKVIAKPVAS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00579 387 Gene3D - 15 378 - -
Cca10g00579 387 Pfam NAD dependent epimerase/dehydratase family 18 288 IPR001509 -
Cca10g00579 387 PANTHER - 5 386 - -
Cca10g00579 387 CDD Arna_like_SDR_e 17 372 IPR045869 GO:0016831
Cca10g00579 387 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 5 386 - -
Cca10g00579 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 370 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00579 Cca-Chr10 6316583 6319769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00579 16 382 Miscellaneous Gene Families AT1G02000 21.337 3.84e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00579 K12449 - gmx:100792879 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00579 10 6316583 6319769 Cca10g00579 10 6316583 6319769 ECH
Cca10g00579 10 6316583 6319769 Cca04g00868 04 9070594 9074573 PCT