Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00868 ATGGCGCGAGTGGATCTGGACGGAAAGCCCATCAAGCCCATGACGATCTGCATGATCGGCGCCGGCGGCTTCATCGGGTCGCACCTCTGCGAAAAACTCATGTCGGAAACCCCTCACACCGTCCTCGCCCTCGACGTCTACAGCGACAAGATCAAGCACCTCCTCGAGCCCGATTCCCTCCCCTGGGCCGGCCGCATTACCTTCCACCGCCTCAACATCAAGCACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCACTATAAATCTCGCTGCTATCTGCACCCCCGCGGATTACAACACGCGCCCTCTCGACACCATTTACAGCAACTTCATCGACGCGCTCCCCGTCGTGAAATACTGCTCGGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGCGAAGTCTACGGAAAAACGATCGGAAGCTTTCTCCCTAAAGATAGTCCTCTCCGCAAGGATCCGGCGTACTTTGTTCTTAAAGAAGATGAGTCTCCCTGCATTTTTGGTCCAATTGAAAAGCAGAGGTGGTCTTATGCCTGTGCAAAACAGTTGATTGAGAGGCTGATTTATGCTGAGGGTGCGGAAAATGGCATGGAGTTCACAATTGTGAGGCCTTTTAATTGGATTGGACCTCGAATGGATTTCATTCCTGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAGAGAACCTTTGTTTACATTAAAGATGCTATTGAAGCTGTCTTATTGATGATTGAAAATCCTGCCAGGGCCAATGGCCATATATTTAATGTGGGCAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATCAAGGTTTACTCAAAGGTAAGTGGAGAACCACTTCCTGAAACACCTACTATTGATGTCAGCTCAAAAGAATTTTATGGTGAGGGATATGATGATAGTGACAAGAGGATTCCTGACATGACCATAATAAACAAGCAGCTTGGATGGAATCCTAAGACTTCACTTTGGGACCTGCTTGAATCCACTCTGACCTATCAACACAGGACATATGCTGAAGCCATTAAGAAAGTCATTGCAAAACCCGTTGCAAGTTAA 1158 0.4845 MARVDLDGKPIKPMTICMIGAGGFIGSHLCEKLMSETPHTVLALDVYSDKIKHLLEPDSLPWAGRITFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRKDPAYFVLKEDESPCIFGPIEKQRWSYACAKQLIERLIYAEGAENGMEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRGEPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEIMIKVYSKVSGEPLPETPTIDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHRTYAEAIKKVIAKPVAS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00868 385 PANTHER - 1 384 - -
Cca04g00868 385 Pfam NAD dependent epimerase/dehydratase family 16 286 IPR001509 -
Cca04g00868 385 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 1 384 - -
Cca04g00868 385 Gene3D - 13 376 - -
Cca04g00868 385 CDD Arna_like_SDR_e 15 370 IPR045869 GO:0016831
Cca04g00868 385 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 14 368 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00868 Cca-Chr4 9070594 9074573 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00868 K12449 - gmx:102667779 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00868 04 9070594 9074573 Cca04g00868 04 9070594 9074573 ECH
Cca10g00579 10 6316583 6319769 Cca04g00868 04 9070594 9074573 PCT