Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00578 ATGTGGTATTCAAGTTATTTCTTGACTTCATTGCTTTTGGTTGCAGTGTTCAATGTGGCTAAAGGACAGCCTCTGGTCCCTGCATTGTTCATATTTGGTGACTCTGTCGTTGATGTGGGCAATAATAACCACTTATACACCATTGTTAAATCAAACTTCTCTCCTTATGGAAGAGATTTCAAGAATCACACTCCAACAGGGAGGTTTTGCAATGGAAAGCTTGCAACAGACTACACAGCTGAAAACCTTGGATTTACCACTTACCAACCAGCTTACCTCAACTTAAAGGTCAAAGGAAAGAACCTCTTGGAGGGGGCCAACTTTGCCTCAGCTGCTTCTGGCTACTATGATTCCACTCCCAAGCTATATGATGCAATTCCATTGAGCCAGCAGCTGGAATACTACAAAGAGTGCCAGAATATATTGGTGGGAATAGTAGGGCAGTCAAATGCTTCATCAATTATATCTGGTGCTATATATGTTATCAGTTCGGGGAGCAGTGACTTTATTCAGAACTATTATTTAAATCCACTGCTTTACGAGGTTTACACTGCTGATCAATTCTCAGACATTCTCATCCAAAACTATGCCACTTTCATTCAGAATTTATATGGACTTGGAGCAAGAAGGATCGCTGTAACAACATTATCTCCATTAGGTTGTCTACCAGCAGCCATCACTCTCTATGGCTCCGGCAGCAACCAATGCGTGGCTAAACTAAACAATGATGCAGTTAACTTCAATAAAAAGCTAAACACCACATCTCAGAGCTTGCAAAAATCGCTATCTGGTCTCAAATTGGTCATCTTCGATACCTACCAACCTCTCTATGACCTGGTCACTAAGCCTTCTGAAAATGGATTTTCGGAAGCAAGGAAGGCTTGTTGTGGAACAGGGTTGCTAGAGACATCTATTTTGTGCAATCAGAAGTCCATAGGAACATGTACCAATGCATCTGAATATGTATTCTGGGATAGTTTTCATCCATCTGAAGCTGCAAACAAGATTTTGGCCGATAACCTGTTGCTTGCTGGCATCTCTCTCATATCCTAA 1053 0.4141 MWYSSYFLTSLLLVAVFNVAKGQPLVPALFIFGDSVVDVGNNNHLYTIVKSNFSPYGRDFKNHTPTGRFCNGKLATDYTAENLGFTTYQPAYLNLKVKGKNLLEGANFASAASGYYDSTPKLYDAIPLSQQLEYYKECQNILVGIVGQSNASSIISGAIYVISSGSSDFIQNYYLNPLLYEVYTADQFSDILIQNYATFIQNLYGLGARRIAVTTLSPLGCLPAAITLYGSGSNQCVAKLNNDAVNFNKKLNTTSQSLQKSLSGLKLVIFDTYQPLYDLVTKPSENGFSEARKACCGTGLLETSILCNQKSIGTCTNASEYVFWDSFHPSEAANKILADNLLLAGISLIS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00578 350 Pfam GDSL-like Lipase/Acylhydrolase 29 340 IPR001087 GO:0016788
Cca10g00578 350 PANTHER GDSL-MOTIF LIPASE 9 349 - -
Cca10g00578 350 SUPERFAMILY SGNH hydrolase 160 341 - -
Cca10g00578 350 CDD SGNH_plant_lipase_like 27 342 IPR035669 -
Cca10g00578 350 Gene3D SGNH hydrolase 17 345 IPR036514 -
Cca10g00578 350 PANTHER GDSL ESTERASE/LIPASE EXL3 9 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00578 Cca-Chr10 6307794 6310458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00578 19 341 Acyl Lipid Metabolism Gene Families AT4G10950 34.154 1.74e-66 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00578 - - gmx:100804640 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00578 10 6307794 6310458 Cca10g00578 10 6307794 6310458 ECH
Cca10g00578 10 6307794 6310458 Cca04g00866 04 9047118 9053118 PCT