Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00866 ATGCGGTGTTCAAGGTTTTTCTTGGCTTCTTTTCTTCTTGCTGTGGTCTTCAGTGTGACTAATGGACAGCCTCTGGTCCCTGCATTGTTCATATTTGGAGACTCAGTTGTTGATGTGGGAAATAATAACTACCAATTGACTGTTGTTAAAGCAAACTTCCCTCCTTATGGAAGAGACTTTGAGAACCACAATCCAACAGGAAGGTTCTGCAATGGAAAGCTTGCCACAGACTTCACTGCTGAAACCATTGGATTTACCACTTATCCACCAGCTTACCTCAACTTAAAGACCAAAGGGAAAAACCTCTTGAATGGTGCCAACTTTGCCTCAGCTGCTTCTGGTTACTATGATTCCACATCAAAACTATATAATGCAATTCCTTTGGGCCGGCAGCTTGAATACTACAAGGAGTGTCAGAACAGATTGGTGGAAGCAGCAGGGCAATCAAGGGCTTCATCAATTATATCTGATGCTATATATCTTATTAGTGCTGGTAGCAGTGATTTTGTTCAGAACTATTACATAAATCCGCTGCTTAACCTGGTGTATTCAACTGAACAATTCACAGACATGCTCATGACAAGCTATTCCAACTTCATCCAGGGTTTATATGCACTGGGAGCAAGGAGGATTGGTGTGACATCATTACCTCCAATAGGTTGCTTGCCTGCATCCATCACCCTCTTTGGTGCTCGTAAGAACGAATGTCTGACTGGTTTAAACAGTGATGCAATTAACTTCAATGAAAAGCTCAACACCACATCTCAGAACTTGCAAAATATGCTTCCAGGCCTCAATTTGGTGGTCCTTGATATCTACCAGCCTCTCTATGACTTGGTCACAATGCCTTTTGAAAATGGATTTTTTGAAGCAAGGAAGGCTTGTTGTGGAACAGGGTTGATAGAGACATCTATATTGTGCAATAAGAAGTCCATAGGAACATGTGCCAATGCATCTGGGTATGTATTTTGGGATGGTTTTCATCCCACAGAGGCTGCAAACAAGTTTTTGGCGGATCAGTTGATTGCTGCTGGCATCTCTCTTATATCCTAA 1053 0.4207 MRCSRFFLASFLLAVVFSVTNGQPLVPALFIFGDSVVDVGNNNYQLTVVKANFPPYGRDFENHNPTGRFCNGKLATDFTAETIGFTTYPPAYLNLKTKGKNLLNGANFASAASGYYDSTSKLYNAIPLGRQLEYYKECQNRLVEAAGQSRASSIISDAIYLISAGSSDFVQNYYINPLLNLVYSTEQFTDMLMTSYSNFIQGLYALGARRIGVTSLPPIGCLPASITLFGARKNECLTGLNSDAINFNEKLNTTSQNLQNMLPGLNLVVLDIYQPLYDLVTMPFENGFFEARKACCGTGLIETSILCNKKSIGTCANASGYVFWDGFHPTEAANKFLADQLIAAGISLIS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00866 350 CDD SGNH_plant_lipase_like 27 342 IPR035669 -
Cca04g00866 350 Pfam GDSL-like Lipase/Acylhydrolase 29 340 IPR001087 GO:0016788
Cca04g00866 350 Gene3D SGNH hydrolase 18 346 IPR036514 -
Cca04g00866 350 PANTHER GDSL-MOTIF LIPASE 9 349 - -
Cca04g00866 350 SUPERFAMILY SGNH hydrolase 29 342 - -
Cca04g00866 350 PANTHER GDSL ESTERASE/LIPASE EXL3 9 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00866 Cca-Chr4 9047118 9053118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00866 18 341 Acyl Lipid Metabolism Gene Families AT4G10950 33.945 6.38e-67 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00866 - - gmx:100775618 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00578 10 6307794 6310458 Cca04g00866 04 9047118 9053118 PCT