Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00574 ATGGCGGCGGTAGCTTTTCTCGCCTCCGCCGCGCTGCTGTTGCTGTCGGCTGCGGCGGCGGCTTTTGGATCGCCGGCGACTCTCACGCTGGAGAGAGCGTTTCCGACGAATCATGGAGTGGACTTGAGTCGGCTGAGAGCTCGCGACGCCTTGAGGCATCGCAGAATGTTGCAGTCTTCAAACGGCGTCGTTGATTTCACCGTTCAAGGCACCTTCGATCCCTTCCAAGTCGGGCTCTACTATACAAAGGTGCAGTTGGGTACTCCTCCGGTTGAATTTAATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGTTGTAAGTCATGCAGTGGTTGTCCTCAAACAAGTGGACTTCAGATTCAGCTCAATTTTTTTGACCCTGGGAGTTCATCAACATCTTCATTGATCTCTTGTTCTGACCAAAGGTGCAATAATGGAATACAATCATCAGATGCCAGCTGTTCCAGTCAGAACAACCAGTGCTCCTACACTTTCCAGTATGGAGATGGGAGTGGGACATCAGGCTATTATGTGTCAGATATGATGCATTTAAATACTATTTTTGAGGGAGCCGTGATCACGAATTCTACAGCACCTGTAGTTTTTGGTTGTAGCGACCAGCAGACTGGGGACTTGACAAAGTCTGACAGAGCAGTTGATGGGATATTTGGATTTGGGCAACAGGAAATGTCTGTTATTTCTCAGCTCTCCTCACAAGGCATTGCCCCAAGAGTATTCTCCCATTGTCTGAAAGGAGATAGCAGTGGTGGGGGCGTATTGGTTCTTGGTGAGATTGTGGAGCCAAACATAGTTTACACTTCACTTGTTCCATCACAGCCCCATTACAATTTAAATCTACAGAGCATTTCTGTTAACGGGCAGACATTGCAAATTGATTCATCAGTTTTTGCAACATCAAACAGCAGAGGTACCATTGTTGATTCTGGAACAACTTTGGCGTACCTTGCAGAAGAAGCTTATGATCCCTTTGTCAATGCGATTACAGCTGCAATTCCACAAAGTGTACGCACTGTTGTTTCCAGGGGAAATCAATGTTTCTTAATCACCACCAGTGTCACCGACACTTTTCCTCAGGTAAGTCTGAACTTTGCTGGTGGTGCATCTATGATTTTAAGACCACAGGACTACCTAATACAGCAGAATTCTATTGGTGGTTCAGCAGTATGGTGTATTGGCTTTCAGAAAATCCAGGGACAAGGAGTAACAATTCTAGGAGATCTCGTATTGAAAGACAAAATTGTTGTTTATGATTTGGCTGGTCAACGAATTGGATGGGCTAACTATGACTGTTCTTTGTCGGTGAATGTCTCTTCAACAACTGGCACTGGCAGAAGTGAATTTGTGAATGCTGGAGAGCTCGGTGGAAGCACTTCTTTACGTGATGGACTTAAGTTGACAAAGACAGGGTTCTTGGCTTTCTTTGTGCAACTAACACTAATTTACTGCTTTGGATTCTTATAG 1488 0.4543 MAAVAFLASAALLLLSAAAAAFGSPATLTLERAFPTNHGVDLSRLRARDALRHRRMLQSSNGVVDFTVQGTFDPFQVGLYYTKVQLGTPPVEFNVQIDTGSDVLWVSCKSCSGCPQTSGLQIQLNFFDPGSSSTSSLISCSDQRCNNGIQSSDASCSSQNNQCSYTFQYGDGSGTSGYYVSDMMHLNTIFEGAVITNSTAPVVFGCSDQQTGDLTKSDRAVDGIFGFGQQEMSVISQLSSQGIAPRVFSHCLKGDSSGGGVLVLGEIVEPNIVYTSLVPSQPHYNLNLQSISVNGQTLQIDSSVFATSNSRGTIVDSGTTLAYLAEEAYDPFVNAITAAIPQSVRTVVSRGNQCFLITTSVTDTFPQVSLNFAGGASMILRPQDYLIQQNSIGGSAVWCIGFQKIQGQGVTILGDLVLKDKIVVYDLAGQRIGWANYDCSLSVNVSSTTGTGRSEFVNAGELGGSTSLRDGLKLTKTGFLAFFVQLTLIYCFGFL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00574 495 Gene3D Acid Proteases 267 446 IPR021109 -
Cca10g00574 495 PRINTS Pepsin (A1) aspartic protease family signature 86 106 IPR001461 GO:0004190|GO:0006508
Cca10g00574 495 PRINTS Pepsin (A1) aspartic protease family signature 313 324 IPR001461 GO:0004190|GO:0006508
Cca10g00574 495 PRINTS Pepsin (A1) aspartic protease family signature 411 426 IPR001461 GO:0004190|GO:0006508
Cca10g00574 495 PANTHER ASPARTYL PROTEASES 15 456 IPR001461 GO:0004190|GO:0006508
Cca10g00574 495 SUPERFAMILY Acid proteases 75 442 IPR021109 -
Cca10g00574 495 ProSiteProfiles Peptidase family A1 domain profile. 80 435 IPR033121 -
Cca10g00574 495 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 15 456 - -
Cca10g00574 495 Pfam Xylanase inhibitor C-terminal 283 435 IPR032799 -
Cca10g00574 495 Pfam Xylanase inhibitor N-terminal 80 265 IPR032861 -
Cca10g00574 495 Gene3D Acid Proteases 58 266 IPR021109 -
Cca10g00574 495 CDD pepsin_A_like_plant 80 439 IPR034161 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00574 Cca-Chr10 6259384 6264296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00574 54 440 Miscellaneous Gene Families AT1G44130 26.667 4.31e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00574 - K00924 gmx:100791299 882.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00574 10 6259384 6264296 Cca10g00574 10 6259384 6264296 ECH
Cca10g00574 10 6259384 6264296 Cca04g00862 04 9015019 9020528 PCT