Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00862 ATGGCCGCCGCTTTTCTCTTCGCCGCCGCGCTTCTGGCGGCGGTCTCCGCCTCCCCGGTGACCCTCACGCTGGAAAGAGCTTTCCCTTCGGATCACGGGGTGGAGCTGAGTCAGCTCAGAGCGTGGGACAGCCTCAGACATCGTAGAATGTTGCAGTCTACTAACTACGTTGTCAATTTCCCTGTCAAAGGCACCTTCGATCCCTCACAAGTCGGGCTTTACTTTACAAAGGTGAAATTGGGTACTCCTCCAAGGGAATTTTATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGTTGTGGGTCCTGCAATGGTTGTCCCCAGACAAGTGGCCTCCCAATTCAGCTCAATTACTTTGACCCTGGGAGTTCATCAACATCTTCATTGATATCTTGTTCGGACCGAAGGTGTAGGAATGGAGTACAGTCCTCAGATGCAAGCTGTTCTGGTCAGAGCAACCAGTGCACTTACACATTCCAGTATGGAGATGGTAGTGGGACATCAGGTTATTATGTGTCGGACTTGATGCACTTTGCCAGTATCTTTGAGGGATCCTTGACAACAAATTCTTCGGCATCCGTAGTTTTTGGTTGTAGCAACCAGCAAACTGGGGACTTAACAAAGTCTGATAGAGCGGTTGACGGGATATTTGGATTTGGGCAACAAGGGTTGTCTGTCATCTCCCAGCTCTCATCGCAAGGAATAGCGCCAAGAGTGTTCTCACATTGCCTGAAAGGAGATAATAGTGGGGGTGGCGTATTGGTTCTTGGTGAGATTGTGGAGCCAAACATAGTTTTTAGTCCACTTGTTCCATCACAGCCCCATTACAATTTAAATCTTCAGAGCATCTCTGTTAATGGCCAAATTCTACCAATTGATCCTGCAGTTTTTGCTACATCAAACAACAGAGGTACCATTGTTGATTCCGGAACAACTTTGGCATACCTTGCAGAAGAGGCTTACAATCCCTTTGTCAATGCGATTACAGCTGCTATTCCACAATCTGTACGCAGTGTTCTTTCCAGGGGAAATCAGTGTTACTTAATAACCACCTCCAGTAATGTTGACATTTTCCCGCAAGTAAGTCTGAACTTTGCTGGTGGTGCATCTCTGGTTTTAAGACCACAGGACTACCTTATGCCGCAGAATTATATTGGCGAGGGATCAGTTTGGTGTATTGGCTTTCAGAAAATCCCGGGTCAAAGTGTAACTATTCTAGGAGACCTCGTACTAAAAGACAAAATATTTGTCTATGATCTTGCTGGTCAGCGCATTGGATGGGCTAATTATGACTGTTCATTGCCGGTTAATGTGTCTGCATCAGCCGGTAGGGGAAGAAGTGAATTTGTGGATGCAGGAGAGATAAATGGCAGCACTTGTTCACGTGATGGACCTCACATGTTGATAAAGACACTGTTCCTTGCTCTCTTCATGCACATAACACTATTCTTGTAA 1461 0.4634 MAAAFLFAAALLAAVSASPVTLTLERAFPSDHGVELSQLRAWDSLRHRRMLQSTNYVVNFPVKGTFDPSQVGLYFTKVKLGTPPREFYVQIDTGSDVLWVSCGSCNGCPQTSGLPIQLNYFDPGSSSTSSLISCSDRRCRNGVQSSDASCSGQSNQCTYTFQYGDGSGTSGYYVSDLMHFASIFEGSLTTNSSASVVFGCSNQQTGDLTKSDRAVDGIFGFGQQGLSVISQLSSQGIAPRVFSHCLKGDNSGGGVLVLGEIVEPNIVFSPLVPSQPHYNLNLQSISVNGQILPIDPAVFATSNNRGTIVDSGTTLAYLAEEAYNPFVNAITAAIPQSVRSVLSRGNQCYLITTSSNVDIFPQVSLNFAGGASLVLRPQDYLMPQNYIGEGSVWCIGFQKIPGQSVTILGDLVLKDKIFVYDLAGQRIGWANYDCSLPVNVSASAGRGRSEFVDAGEINGSTCSRDGPHMLIKTLFLALFMHITLFL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00862 486 Pfam Xylanase inhibitor C-terminal 277 430 IPR032799 -
Cca04g00862 486 ProSiteProfiles Peptidase family A1 domain profile. 74 430 IPR033121 -
Cca04g00862 486 Gene3D Acid Proteases 48 260 IPR021109 -
Cca04g00862 486 PRINTS Pepsin (A1) aspartic protease family signature 80 100 IPR001461 GO:0004190|GO:0006508
Cca04g00862 486 PRINTS Pepsin (A1) aspartic protease family signature 307 318 IPR001461 GO:0004190|GO:0006508
Cca04g00862 486 PRINTS Pepsin (A1) aspartic protease family signature 406 421 IPR001461 GO:0004190|GO:0006508
Cca04g00862 486 SUPERFAMILY Acid proteases 71 436 IPR021109 -
Cca04g00862 486 Gene3D Acid Proteases 261 439 IPR021109 -
Cca04g00862 486 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 3 451 - -
Cca04g00862 486 CDD pepsin_A_like_plant 74 434 IPR034161 -
Cca04g00862 486 Pfam Xylanase inhibitor N-terminal 74 259 IPR032861 -
Cca04g00862 486 PANTHER ASPARTYL PROTEASES 3 451 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00862 Cca-Chr4 9015019 9020528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00862 48 435 Miscellaneous Gene Families AT1G44130 26.420 3.59e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00862 - K00924 gmx:100811632 867.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00862 04 9015019 9020528 Cca04g00862 04 9015019 9020528 ECH
Cca10g00574 10 6259384 6264296 Cca04g00862 04 9015019 9020528 PCT