Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00556 ATGTCAGAGCAAAAGAAATCCCCCAAAAGCAGGGTTTTCTACGTTCGAATGAAGCTGCTGCAGAAACAAGTTAACAAGCCTCAACAAGACAAAACCAACTTCTTTCACACATATTACAAATGCCTTCTTTGGCTTTCTTTCTCCCTCTATTTCTTCACTTCCTATCTcatcaacagcaaccccaacaacacaccaacCTCTTCAAACTCCGAATCCAACGTTGTCGAATCCACCACCAACACTCTAGGGGTGGTGAAGAATATGAAGGTGTTCGTGTACGAGCTTCCTCCAAAGTACAACACCGATTGGCTGGCAAATGAGAGGTGTAGCAAGCATTTATTCGCGTCCGAAGTGGCCATTCACAGAGCATTGTTAACGAGCGAGGTTCGCACGTTTGACCCTTACCAAGCTGATTTCTTCTTCGTCCCCGTTTACGTGTCATGCAACTTCAGCGCCGTTAATGGCTTTCCGGCAATTGGCCACGCGCGCTCTCTTATATCCTCCGCCGTCAACCTCGTCTCCACCGAGTACCCTTTCTGGAACCGCACCAGAGGATCCGACCACGTCTTCGTCGCTTCCCACGACTTCGGCGCCTGTTTCCACACCCTGGAGGATGCGGCGATGGCTGATGGCATACCGCGAATTTTGAAAAACTCGATCTTGTTGCAGACATTCGGCGTAGTTCACCGGCATCCTTGTCGAGAGGTTGAGAATGTGGTGATTCCGCCTTACGTTTCGCCGGAGAGTGTACGGACCACGCTGGAGAAAGCTCCGGTGAACGGACGGAGAGACATTTGGGCGTTCTTCCGAGGAAAAATGGAAGTGCATCCAAAAAATATTAGTGGACGGTTTTACAGCAAGCGAGTGAGGACGGAGATTTGGCGGAAGTTCAACGGTGACCGGAGATTTTACCTGCAGAGGCGTAGGTTCGCCGGTTACCAGTTGGAGATTGCTCGGTCTGTGTATTGTCTGTGTCCGTTAGGGTGGGCTCCGTGGAGTCCGAGGTTGGTGGAGGCGGTTGCGTTGGGGTGTGTGCCGGTGGTTATTGCGGATGGGATACGGTTGCCGTTTTCCTCCGCCGTGAGGTGGGCGGAGATATCGCTGACGGTGGCGGAGAGGGATGTGGGGAAGCTGGGGAAGATTCTGGAGCGCGTGGCGGCGACGAACTTGAGTGTGATTCAGCGGAACCTGTGGGAGCCGCGGACGAGGCGGGCCCTGCTCTACAACAATCGGGTGCAGGAAGGCGACGCCACGTGGCAAGTTCTGGTTAGTCTGAGTGAGAAGCTGGGTAGGTCATACCGGAGGTCTTCGGGTCTTAGCCAATTAGAAATCGACACGCAAGGGGTTTGGAAATGGAAATGCTAG 1365 0.5187 MSEQKKSPKSRVFYVRMKLLQKQVNKPQQDKTNFFHTYYKCLLWLSFSLYFFTSYLINSNPNNTPTSSNSESNVVESTTNTLGVVKNMKVFVYELPPKYNTDWLANERCSKHLFASEVAIHRALLTSEVRTFDPYQADFFFVPVYVSCNFSAVNGFPAIGHARSLISSAVNLVSTEYPFWNRTRGSDHVFVASHDFGACFHTLEDAAMADGIPRILKNSILLQTFGVVHRHPCREVENVVIPPYVSPESVRTTLEKAPVNGRRDIWAFFRGKMEVHPKNISGRFYSKRVRTEIWRKFNGDRRFYLQRRRFAGYQLEIARSVYCLCPLGWAPWSPRLVEAVALGCVPVVIADGIRLPFSSAVRWAEISLTVAERDVGKLGKILERVAATNLSVIQRNLWEPRTRRALLYNNRVQEGDATWQVLVSLSEKLGRSYRRSSGLSQLEIDTQGVWKWKC 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00556 454 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 28 440 IPR004263 GO:0006486|GO:0016757
Cca10g00556 454 PANTHER GLUCURONOSYLTRANSFERASE, PUTATIVE-RELATED 28 440 - -
Cca10g00556 454 Pfam Exostosin family 86 384 IPR040911 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00556 Cca-Chr10 6025142 6027681 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00556 K20889 - gmx:100807050 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00556 10 6025142 6027681 Cca10g00556 10 6025142 6027681 ECH
Cca10g00556 10 6025142 6027681 Cca04g00838 04 8679890 8682715 PCT