Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00838 ATGGCTAAGCACAAGACAGCCCCAAGTAACAGGGGGTACTATGTCAAGATGAAGCTCCTTCACAAACATGGCAGACCCCAGCAAGACAAAAACTGCTTCTACAGATACTACAAATGCCTCCTCTGGCTCTCTTTCTCCCTCTACTTCTTCTCCTCCTACCTCATCAGCAACAACACCAAGTCACCCTCTCACCACGTCTCCAGAGCACTCGCCCAATCAGACAACGCCACACAACCTCTGAAAACTCCAGCAGGGACGCTGAAGAACCTGAAGGTGTTCGTTTACGACCTCCCTCCGAAGTACAACACGGACTGGTTGGCGAACGAGAGGTGTAGCAAACATTTGTTTGCGTCGGAGGTTGCCATTCATAGAGCGTTATTGACCAGCGACTTTCGCACGTTTGACCCTTACGAAGCTGACTTTTTCTTCGTCCCTGTTTACGTCTCCTGCAACTTCAGCACCGTCAACGGCTTCCCCGCGATTGGTCACGCGCGCAACCTCATCGCCTCCGCCGTCAAACTCCTCTCCTCGGAGTATCCCTTCTGGAACCGGAGCCGAGGCTCCGACCACGTCTTCGTCGCCTCGCACGATTTCGGCTCGTGTTTCCACACCCTGGAGGACGTGGCGATGGCGGATGGCGTGCCAGAGATTATGAAGAACTCGATCGTGTTGCAGACGTTTGGCGTGGTGTACGACCACCCGTGCCAGAGGGTTGAGCACGTGGTGATTCCGCCGTACGTTTCGCCGGAAAGCGTACACGACACGATGGAGAAATCTCCGGTGAACGGACGGCGAGATATTTGGGTTTTCTTCCGAGGAAAAATGGAAGTCCATCCTAAGAACGTCAGTGGGCGTTTTTACAGCAAGAAAGTGCGGACTGTGATATGGCGAAAGTTCAACGGGGACCGGAGGTTTTACCTGCGGAGGCATAGGTTGGGCGGTTACCAGTCAGAGATTGCGCGCTCCGTGTTTTGTCTTTGTCCCTTGGGGTGGGCCCCGTGGAGTCCGAGGCTGGTTGAGTCCGTGGCGTTGGGTTGCGTGCCGGTTGTTATAGCGGACGGCATCCGGTTGCCGTTTCTCTCTGCCGTGAAGTGGTCGGAGATATCGGTGACGGTGGCGGAGAGGGACGTGGGGAGGCTGGGTGAGATACTCGAGCGCGTGGCGGCGACGAATCTCAGCATCATTCAGAGGAAGCTGTGGGACCCAGCGACTAGAAGGGCCCTACTATTCAACAGCCAGGTGCAGGAAGGGGATGCCACGTGGCAGGTGCTGAGGGCTTTGAGCGAAAAGCTTGATAGGTCCTATAGGGGTTCCAGGGTTTCTCGCCAATTGGATTTTGACACGTCATGA 1350 0.5541 MAKHKTAPSNRGYYVKMKLLHKHGRPQQDKNCFYRYYKCLLWLSFSLYFFSSYLISNNTKSPSHHVSRALAQSDNATQPLKTPAGTLKNLKVFVYDLPPKYNTDWLANERCSKHLFASEVAIHRALLTSDFRTFDPYEADFFFVPVYVSCNFSTVNGFPAIGHARNLIASAVKLLSSEYPFWNRSRGSDHVFVASHDFGSCFHTLEDVAMADGVPEIMKNSIVLQTFGVVYDHPCQRVEHVVIPPYVSPESVHDTMEKSPVNGRRDIWVFFRGKMEVHPKNVSGRFYSKKVRTVIWRKFNGDRRFYLRRHRLGGYQSEIARSVFCLCPLGWAPWSPRLVESVALGCVPVVIADGIRLPFLSAVKWSEISVTVAERDVGRLGEILERVAATNLSIIQRKLWDPATRRALLFNSQVQEGDATWQVLRALSEKLDRSYRGSRVSRQLDFDTS 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00838 449 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 27 436 IPR004263 GO:0006486|GO:0016757
Cca04g00838 449 PANTHER GLUCURONOSYLTRANSFERASE, PUTATIVE-RELATED 27 436 - -
Cca04g00838 449 Pfam Exostosin family 88 386 IPR040911 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00838 Cca-Chr4 8679890 8682715 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00838 K20889 - gmx:100818569 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00838 04 8679890 8682715 Cca04g00838 04 8679890 8682715 ECH
Cca10g00556 10 6025142 6027681 Cca04g00838 04 8679890 8682715 PCT