Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00555 ATGCCATCTTTACCTTCCTCTTTCTTCAAAATGGTTCCTCTCTTCTCTCTTCTTTTATTCTCACTCATGATTCGTTGTAGTACTTCTCTGGGTCCACCTTCACCTGGGTACTACCCTAGTTCCAAAATCAGCCCTGTTAGCTTTAACGAGGGATTTAGAAACCTTTGGGGACCTCAGCATCAAAGACTAGACCAAGACACATTAACAATCTGGCTTGACAAAACCTCAGGGAGTGGATTCAAGTCACTTCGCTCTTACCGATCTGGATACTTTGGTGCTGCTATTAAGCTTCAACCTGGTTATACTGCCGGAGTCATAACATGTTTATACCTTTCAAACAACCAAGACTTCCCGGGATACCATGATGAAATAGACATTGAGTTCCTTGGTACCACGCCAGATAAGCCATATGTCTTGCAGACAAATGTATACATGAGAGGAAGTGGAGATGGGAATATTATAGGGAGAGAGATGAGGTTTCACCTTTGGTTCGACCCAACACAAGATTTTCACAACTACGCTATTCTGTGGGAACCCAGTGAGATCATATTTTTAGTGGATGATGTCCCAATAAGGAGGTATCCTAGAAAGAGTGATGCCACGTACCCCACGAGACAAATGTATGTGTATGGATCAATATGGGATGCATCTGACTGGGCTACAGAGGGTGGAAAATACAAAGCTGACTATAAATACCAACCCTTCATTGGTAGATACAGAAACTTCAAAATACAAGGTTGTGCCCTTGAAGCCCCCACCTCATGCAAGCCACCGTCTCCCTCACCATATGGCTATGGAAGCTTAAGCCCTCAGCAATATGCTGCAATGCAATGGGTCCAAAACAACTACATGGTCTATGACTATTGCCATGATCCTAGGAGAGACCATACACTTACTCCAGAATGCTAA 909 0.4356 MPSLPSSFFKMVPLFSLLLFSLMIRCSTSLGPPSPGYYPSSKISPVSFNEGFRNLWGPQHQRLDQDTLTIWLDKTSGSGFKSLRSYRSGYFGAAIKLQPGYTAGVITCLYLSNNQDFPGYHDEIDIEFLGTTPDKPYVLQTNVYMRGSGDGNIIGREMRFHLWFDPTQDFHNYAILWEPSEIIFLVDDVPIRRYPRKSDATYPTRQMYVYGSIWDASDWATEGGKYKADYKYQPFIGRYRNFKIQGCALEAPTSCKPPSPSPYGYGSLSPQQYAAMQWVQNNYMVYDYCHDPRRDHTLTPEC 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00555 302 Pfam Glycosyl hydrolases family 16 49 231 IPR000757 GO:0004553|GO:0005975
Cca10g00555 302 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 267 302 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Cca10g00555 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 13 302 IPR044791 GO:0004553
Cca10g00555 302 SUPERFAMILY Concanavalin A-like lectins/glucanases 47 302 IPR013320 -
Cca10g00555 302 PIRSF EndGlu_transf 11 302 IPR016455 GO:0010411|GO:0016762|GO:0042546
Cca10g00555 302 Gene3D - 29 302 - -
Cca10g00555 302 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 27 239 IPR000757 GO:0004553|GO:0005975
Cca10g00555 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 13 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00555 Cca-Chr10 6015853 6018524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00555 15 302 Glycoside Hydrolase AT3G44990 65.979 1.02e-142 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00555 K08235 - gmx:100796768 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00555 10 6015853 6018524 Cca10g00555 10 6015853 6018524 ECH
Cca10g00555 10 6015853 6018524 Cca04g00837 04 8666198 8668861 PCT