Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00837 ATGCCATCATCACTATCCTCTTCCCTCCACATGCTTCTTCCTATTTTCTCCCTTCTTGTACTCTCATGTATTGTGTGTTCTAGTAGTGCTCAGGGACCACCTTCACCTGGCTACTACCCCAGTTCCAAAATTAGTCCTATTAGCTTCAATCAAGGATTTAGAAACCTCTGGGGACCTCAGCATCAAAGACTAGACCAAGGCTCATTGACAATATGGCTTGACTCTAACTCAGGAAGTGGATTCAAGTCACTTCACTCTTATCGATCTGGTTACTTCGGTGCTGCCATTAAGCTTCAACCTGGTTACACTGCAGGAGTCATTACATCTCTATACCTTTCAAACAACCAAGAGCACCCCGGAAACCATGATGAAATTGACATTGAGTTCCTTGGCACCACGCTAGATAAGCCATATGTGTTGCAGACAAATGTGTACATAAGAGGAAGTGGAGATGGGAATATTATAGGAAGAGAGATGAGGTTTCATCTTTGGTTTGACCCAACACAGGATTTTCACAACTATGCCGTTCTATGGAAACCCAGTGAGATAATATTTTTTGTGGATGATGTCCCCATAAGGAGGTATCCTAGAAAAAGTGATGCCACATTCCCTTCAAGGCCAATGTATGTGTATGGCTCAATATGGGATGCATCTTCTTGGGCAACAGAGGATGGAAAATACAAAGCCAATTATAACTACCAACCCTTCATTGGTAGGTACAAAAACTTCAAACTCCAAGGTTGCACCTCTCAAAGCTCTTCCTCATGCCAACCAACTTCTGCTTCACCATCTGGATTTGGTAGTCTGAGCCCTCAGCAGTTTAGGGCCATGCAATGGGTCCAAAACAACTACATGGTGTACTATTATTGCCATGACCCTAGGAGAGATCACACACTTATCCCAGAGTGCTAA 912 0.4342 MPSSLSSSLHMLLPIFSLLVLSCIVCSSSAQGPPSPGYYPSSKISPISFNQGFRNLWGPQHQRLDQGSLTIWLDSNSGSGFKSLHSYRSGYFGAAIKLQPGYTAGVITSLYLSNNQEHPGNHDEIDIEFLGTTLDKPYVLQTNVYIRGSGDGNIIGREMRFHLWFDPTQDFHNYAVLWKPSEIIFFVDDVPIRRYPRKSDATFPSRPMYVYGSIWDASSWATEDGKYKANYNYQPFIGRYKNFKLQGCTSQSSSSCQPTSASPSGFGSLSPQQFRAMQWVQNNYMVYYYCHDPRRDHTLIPEC 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00837 303 Gene3D - 29 303 - -
Cca04g00837 303 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 15 303 - -
Cca04g00837 303 SUPERFAMILY Concanavalin A-like lectins/glucanases 48 303 IPR013320 -
Cca04g00837 303 PIRSF EndGlu_transf 8 303 IPR016455 GO:0010411|GO:0016762|GO:0042546
Cca04g00837 303 Pfam Glycosyl hydrolases family 16 50 232 IPR000757 GO:0004553|GO:0005975
Cca04g00837 303 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 15 303 IPR044791 GO:0004553
Cca04g00837 303 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 267 303 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Cca04g00837 303 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 28 240 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00837 Cca-Chr4 8666198 8668861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00837 11 303 Glycoside Hydrolase AT3G44990 65.870 1.25e-142 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00837 K08235 - gmx:100781528 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00837 04 8666198 8668861 Cca04g00837 04 8666198 8668861 ECH
Cca10g00555 10 6015853 6018524 Cca04g00837 04 8666198 8668861 PCT