Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00554 ATGGCATCATCCTCAAGGTTCCTCAAAACCTCTCTGTCTTTTATGTTCCTCTTCCTCATCTCCATTTCACCCTCCTTCTCCACAAGCAATCACCTTCGTTTTTCTTCAACAGCAGAAAAACTCATAAGAGGCCTTAACCTCTTTCCAAAAGATCCTATTAACACTGTCGAGAATGACCCTCATCTTGTCTCGGGAAACATTGTGGAGAAGAGGTTCACTTTCCCAAGTCTTGCTGCTCCAGGATCTTCTGTTGAGGAACTTGGCCACCATGCAGGCTATTATCGCCTTCCTCGTTCCAAAGCTGCAAGGATGTTCTACTTCTTCTTTGAATCTCGAAGCAGTAAGGATGATCCCGTTGTCATATGGTTGACTGGAGGACCAGGATGCAGCAGCGAACTAGCTTTGTTTTACGAAAATGGTCCTTTTCAGTTAACCAATAACTTGTCTCTTGTGTGGAATGAGAATGGCTGGGACAAGGCATCAAATATTATATTTGTAGACCAACCCACTGGGACGGGGTTCAGCTATACTTCTGATGACAGTGACATTCGCCATGATGAAGAGGGTGTTAGCAATGATTTGTATGACTTCTTGCAGGCATTTTTCAAGGAGCACCCTCAATTCACTAAGAATGACTTTTTTATCACTGGAGAGTCGTATGCTGGACACTACATTCCAGCTCTTGCATCCAGGGTTCACCAAGGAAACAAAGCAAAAGAAGGAATTCATATAAATCTGAAGGGTTTTGCTATTGGTAATGGATTAACCAACCCTGAAATTCAGTACCAGGCATATACAGACTTTGCATTAGACAGGGGACTAATTAAAAAGACTGATTATGACAGTATCAACAAGTTGGTCCCATCTTGTCAGAAGGCCATAAAAACTTGCGGTATCGAAGGTGGAGAAACATGCACATCTTCGTTATACGTTTGCAATGACATATTCAATCGGATCATGTCCATAGCTGGCGATGTTAATTACTATGACATTAGAAAGAAATGTGAGGGAGATCTGTGCTATGACTTCTCTAACATGGAGGATTTCTTAAACGAAAAGACAGTGAGAGATGCTTTAGGTGTTGGGAACTTGGACTTTGTTTCATGCAGTAGCACAGTGTATAGTGCTATGATGCAAGACTGGATGAGAAATCTGGAAGTGGGTATTCCCGCACTACTTGAGGATGGAATCAAGGTGCTTGTGTATGCTGGTGAAGAAGATCTCATATGTAATTGGCTAGCAGGGAATTCAAGGTGGGTTCAAGCAATGGAGTGGTCAGGTCAAAAAGAGTTTGGGGCGTCTCGTGCAGTCCCATTTTTGGTTGATGGTGCAGAAGCAGGAACACTGAAAAGCCATGGACCTCTCGCTTTCCTCAAGGTGTATGAAGCTGGTCACATGGTACCTATGGATCAACCAAAAGCTGCCCTTCAGATGCTAAGAAGCTGGACGCAAGGGAAACTGACAATGACAAAGAGTGGAGATAATGTCTCTCCTAAATAA 1500 0.4313 MASSSRFLKTSLSFMFLFLISISPSFSTSNHLRFSSTAEKLIRGLNLFPKDPINTVENDPHLVSGNIVEKRFTFPSLAAPGSSVEELGHHAGYYRLPRSKAARMFYFFFESRSSKDDPVVIWLTGGPGCSSELALFYENGPFQLTNNLSLVWNENGWDKASNIIFVDQPTGTGFSYTSDDSDIRHDEEGVSNDLYDFLQAFFKEHPQFTKNDFFITGESYAGHYIPALASRVHQGNKAKEGIHINLKGFAIGNGLTNPEIQYQAYTDFALDRGLIKKTDYDSINKLVPSCQKAIKTCGIEGGETCTSSLYVCNDIFNRIMSIAGDVNYYDIRKKCEGDLCYDFSNMEDFLNEKTVRDALGVGNLDFVSCSSTVYSAMMQDWMRNLEVGIPALLEDGIKVLVYAGEEDLICNWLAGNSRWVQAMEWSGQKEFGASRAVPFLVDGAEAGTLKSHGPLAFLKVYEAGHMVPMDQPKAALQMLRSWTQGKLTMTKSGDNVSPK 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00554 499 Pfam Serine carboxypeptidase 86 484 IPR001563 GO:0004185|GO:0006508
Cca10g00554 499 SUPERFAMILY alpha/beta-Hydrolases 89 486 IPR029058 -
Cca10g00554 499 Gene3D alpha/beta hydrolase 69 497 IPR029058 -
Cca10g00554 499 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 27 488 IPR001563 GO:0004185|GO:0006508
Cca10g00554 499 PANTHER SERINE CARBOXYPEPTIDASE 3 27 488 - -
Cca10g00554 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 201 226 IPR001563 GO:0004185|GO:0006508
Cca10g00554 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 455 468 IPR001563 GO:0004185|GO:0006508
Cca10g00554 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 176 IPR001563 GO:0004185|GO:0006508
Cca10g00554 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 153 165 IPR001563 GO:0004185|GO:0006508
Cca10g00554 499 ProSitePatterns Serine carboxypeptidases, serine active site. 215 222 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00554 Cca-Chr10 5999325 6002707 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00554 K16298 - gmx:100785987 902.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00554 10 5999325 6002707 Cca10g00554 10 5999325 6002707 ECH
Cca04g00833 04 8592577 8595251 Cca10g00554 10 5999325 6002707 PCT