Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00833 ATGTTCTACTTTTTCTTTGAATCACGAAACAAAAAGGATGATCCTGTTGTTATATGGTTGACTGGAGGACCAGGTTGCGCCAGTGAACTAGCTTTGTTTTATGAAAATGGTCCTTTCCATATTGCTAATGATTCGTCTCTTACATGGAATGATTATGGCTGGGACCAGGCATCAAATATTATATTTGTTGACCAGCCTACAGGTACAGGTTTTAGTTACTCTTCTGATGAAAGTGACATTCCACATGATGAAGTTGGCGTCAGCAATGATTTATATGACTTCTTGCAGGAGTTTTTCAAGGCGCATTCAAATTTCATTAAGAATGACTTTTATATTACTGGAGAATCATATGCCGGACACTATATTCCGGCTCTTGCTTCCCGAATTAACCAAGCAAATAAGAAAAATGAAGGACTTCATATAAACCTTAAGGGTTTTGCTATCGGTAATGGATTAACAAATCCTGCAATTCAATACCCAGCATATAATGATTTCGCATTAGACAATGGAGTAATTAGAAAGGAAGATTACGATGATATCAAAAAGTTAATCCCAGGCTGTGAGCAAGCTGCTAAAACTTGTGATGCTCAAGGTGGACAAAGTTGCGAGACTGCATTAGAAACGTGTGAAAACATATTCAATAGTATCACAACAATTGCTGGCAACATTAATGTCTATGACATTAGAAAGCAATGTGTGGGATCTTTGTGCTATGACTTTGGAAATGTGGAGATATTGTTAAGCCAACAGCAAGTAAAGAGTGCTTTGGGTGTGCCAAACGACTTGCAGTTTGTTTCATGCAGTTCAAGAGTGCATGATGCCTTTGAGGAAGATTTGATGAGAAACTTGGAGGTGGGAATTCCTTCTCTTCTTGAGGATGGAATCAAGATGCTTGTGTATGCTGGTGATAAGGATCTCATATGCAATTGGCTTGGGAATTCAAGGTGGGTTCACGCGATGGAGTGGTCAGGTCAAAAGTCCTTTGGAACATCTCCTACTGTGAAATTTGTGGTTGATGGTGTTGAAGCAGGGTCTTTGAATAGTTATGGACCTCTTTCTTTTCTCAAGGTACGTGATGCTGGGCACTTGGTCCCTATGGATCAACCAAAAGCTGCACTTGAAATGTTGAAAAGCTGGATGGCAGGGAATCTGAAATAA 1158 0.3955 MFYFFFESRNKKDDPVVIWLTGGPGCASELALFYENGPFHIANDSSLTWNDYGWDQASNIIFVDQPTGTGFSYSSDESDIPHDEVGVSNDLYDFLQEFFKAHSNFIKNDFYITGESYAGHYIPALASRINQANKKNEGLHINLKGFAIGNGLTNPAIQYPAYNDFALDNGVIRKEDYDDIKKLIPGCEQAAKTCDAQGGQSCETALETCENIFNSITTIAGNINVYDIRKQCVGSLCYDFGNVEILLSQQQVKSALGVPNDLQFVSCSSRVHDAFEEDLMRNLEVGIPSLLEDGIKMLVYAGDKDLICNWLGNSRWVHAMEWSGQKSFGTSPTVKFVVDGVEAGSLNSYGPLSFLKVRDAGHLVPMDQPKAALEMLKSWMAGNLK 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00833 385 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 48-RELATED 1 382 - -
Cca04g00833 385 ProSitePatterns Serine carboxypeptidases, histidine active site. 352 369 IPR033124 GO:0004185
Cca04g00833 385 PRINTS Carboxypeptidase C serine protease (S10) family signature 50 62 IPR001563 GO:0004185|GO:0006508
Cca04g00833 385 PRINTS Carboxypeptidase C serine protease (S10) family signature 63 73 IPR001563 GO:0004185|GO:0006508
Cca04g00833 385 PRINTS Carboxypeptidase C serine protease (S10) family signature 98 123 IPR001563 GO:0004185|GO:0006508
Cca04g00833 385 PRINTS Carboxypeptidase C serine protease (S10) family signature 352 365 IPR001563 GO:0004185|GO:0006508
Cca04g00833 385 Pfam Serine carboxypeptidase 1 381 IPR001563 GO:0004185|GO:0006508
Cca04g00833 385 ProSitePatterns Serine carboxypeptidases, serine active site. 112 119 IPR018202 GO:0004185
Cca04g00833 385 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 1 382 IPR001563 GO:0004185|GO:0006508
Cca04g00833 385 Gene3D alpha/beta hydrolase 1 384 IPR029058 -
Cca04g00833 385 SUPERFAMILY alpha/beta-Hydrolases 1 382 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00833 Cca-Chr4 8592577 8595251 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00833 K16298 - gmx:100806118 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00833 04 8592577 8595251 Cca04g00833 04 8592577 8595251 ECH
Cca04g00833 04 8592577 8595251 Cca10g00554 10 5999325 6002707 PCT