Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00534 ATGGCAATAAAATTGGAGAAGCCTCCTTCCATGGTTTTGATTATTTGCTGCTTATTTACAGCACTTTTATTCCTCTCTTTACCAGTGATGTCTCAAGAAGTTGAAGATGAGAGTGAGTTTAATTACGAGGAAAATAGCGAAAAGGGACCATCTCATTGGGGAGACATACATCCCGAATGGAGTTTGTGCAAAAATGGATCCATGCAGTCCCCGATTGATCTATTGAATGAGAGGGTTGAAATACTATCCCACCTAGGCAGGCTTCAAATCAACTACCAACCCTCCAATGGAACTATTAAAAATAGGGGCCACGATATCAAGCTAGAATGGGTTTCTGGGGCAGGCTATCTTCAAATTAATGAAACTAAGTACGTACTCAAACAATGCCATTGGCATTCTCCCTCTGAACACACCATAGATGGAAAAAGGTTTGATCTAGAGTTACACATGGTGCACGAAACTCCATCAGGACAAACTGCTGTGATTGGAATTCTGTTTAAAATTGGAAGGCCAGATTCTTTCTTGTCATCGTTAACGAATCATTTAAAGGCCATTTCTGATAGCACGGAAGCAGAAAGAGTGGTAGGTGTAGTTGACCCTAGGCAGATCAAAGTTGTGTACAAGCAGTATTACAGGTATAATGGTTCGTTGACTATTCCTCCTTGCACTCAGAATGTTTCTTGGACCATCCTTAGAGAGATACGATCCGTTTCAAAGGAGCAGGTTAGATTGCTTCGAGTCGCTGTTCATGATGAATCAAATACAAACGCAAGGCCACTGCAACCAATAAATAACCGGTTGCTGCAACTGAATGGGCCAAAATATGTTAAAGATCAAAATTGA 843 0.4093 MAIKLEKPPSMVLIICCLFTALLFLSLPVMSQEVEDESEFNYEENSEKGPSHWGDIHPEWSLCKNGSMQSPIDLLNERVEILSHLGRLQINYQPSNGTIKNRGHDIKLEWVSGAGYLQINETKYVLKQCHWHSPSEHTIDGKRFDLELHMVHETPSGQTAVIGILFKIGRPDSFLSSLTNHLKAISDSTEAERVVGVVDPRQIKVVYKQYYRYNGSLTIPPCTQNVSWTILREIRSVSKEQVRLLRVAVHDESNTNARPLQPINNRLLQLNGPKYVKDQN 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00534 280 SMART Carb_anhydrase_2a 42 272 IPR001148 -
Cca10g00534 280 ProSitePatterns Alpha-carbonic anhydrases signature. 135 151 IPR018338 GO:0004089|GO:0008270
Cca10g00534 280 PANTHER CARBONIC ANHYDRASE 25 274 IPR023561 GO:0004089|GO:0008270
Cca10g00534 280 CDD alpha_CA_prokaryotic_like 49 267 IPR041891 -
Cca10g00534 280 Pfam Eukaryotic-type carbonic anhydrase 49 269 IPR001148 -
Cca10g00534 280 PANTHER BIFUNCTIONAL MONODEHYDROASCORBATE REDUCTASE AND CARBONIC ANHYDRASE NECTARIN-3 25 274 - -
Cca10g00534 280 ProSiteProfiles Alpha-carbonic anhydrases profile. 38 272 IPR001148 -
Cca10g00534 280 SUPERFAMILY Carbonic anhydrase 39 267 IPR036398 -
Cca10g00534 280 Gene3D Alpha carbonic anhydrase 36 274 IPR036398 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00534 Cca-Chr10 5707479 5710029 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00534 K01674 - gmx:100810249 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00534 10 5707479 5710029 Cca10g00534 10 5707479 5710029 ECH
Cca04g00812 04 8269880 8272602 Cca10g00534 10 5707479 5710029 PCT