Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00520 ATGTTTTGGAAACTCGCTTCGCTTTCTGCTTCCTCCCCCGTGGAGGCTATATTAGACAAGGAGAATTTCACTTTGGAAGAGCTTCTGGATGAAGAGGAAGTGATCCAAGAATGCAAGGCCTTAAACAGTCGTCTTATTAACTTTCTGAGAGATCAAGCCCAGGTTGAGCAATTGTTACGATACATTATTGAAGAACCACCAGAAGATGCTGAAAGTAAACGTGCCTTCAAGTTTCCATTCATTTCCTGTGAGATTTTTACATGTGAAATTGATGTCATTTTGAAGACCTTGGTCGATGACGAAGAGCTGATGAACTTATTATTCTCCTTTTTGGAGCCTAACCGCTCACATAGTACCTTGTTGGCTGGCTACTTTAGCAAGGTTGTTGTTTGCCTAATGATTCGAAAGACAGTGCCACTTATGAATTATGTTCAAGCCCATCAGAATGTTTTTCGCCAACTGGTTGATTTGATAGGAATCACATCCATTATGGAGGTTTTGGTTCGATTAGTAGGCGCTGATGATCATGTGTATCACAATTTTATAGATGTGATGCAATGGTTGGCCAACAGCAACCTGCTTGAGATGATTGTTGATAAATTGAGTCCATCTAGTCCTCCTGAAGTTCATGCCAATGCGGCTGAAACATTGTGCACGATAACTCGAAATCCCTCTTCTACTCTAGCAATTAAACTTTCAAGCCCAAGCTTTGTTGCAAAAATTTTGGATCATGCATTGGAAGTTTCACAATCAAAGTCTAGCCTTGTGAACTCACTTTCAGTGTGTGTTTCTTTGTTGGATCCCAAAAGATCTGCTATATCATCTCCCCTTTTTCATTCATTTCGAAGTCAACACATGTATGAGCCACCGATTCCTGTAAACCCAGACACTATTGGTGCAATGCTCCCTAAACTCGGTGAATTGCTCGTACTTTTGAATGTATCATCTGATGAAAAAGTACTGCCTACAACATATGGAGAATTGAGACCTCCACTTGGGAAGCATCGATTAAAGATTGTTGAGTTCATTGCTGTCATTCTAAAAACTGGAAATGAAGTGGCAGAAAAAGAAATGGTCAATTCGGGAATCATTCAACGAGTCATTGACCTTTTCTTTGAGTATCCGTATAATAATTCATTACACCATCATGTAGAAAGTATCATTTTATCTTGTTTGGAGAGCAAAACTGAAGCCATTGTTGATCATCTTCTTCGAGAGTGTGATTTAATTGGAAGATTTCTCCAAGCAGACAAACATTCTCTTCTCTCTTCTGACAAAAATCTGCCAACAGTACCTGCTGCTGGAAAACAGGCACCACGGGCAGGAAACATCGGGCATATTACTCGAATTGTTAACAAACTTGTTCACTTGGCACATAATCGAAGCCATATACTGACATATCTTCAGGAAAATAGTGAGTGGAATGAATGGCAAGCTACAGTTCTTCAGGAGCGTAATGTGGTTGAGAATGTTCACCGTTGGGCTTGCGGACGTCCAACTGCTTTACAAGATAGGATGAGGGATAGTGACGATGATGACCTTCATGACAGAGACTATGATGTTGCAGCTTTAGCAAATAATTTGAGCCAGGCTTTTAGATATAAAATTTATGGGAATGAAGATAATGAGGAGGAACGTGGCAACCTTGATCGAGATGAAGAGGATGTCTACTTTGATGATGACTCTGCTCAAGTAGTCATATCATCCCTCAGACTCAGTGATGATCAAGGGAGTAGTCTGTTTACAAACTCCAATTGGTTTGCATTCCAAGATGACAGAATTGCGGATGGAACTGAGGGCACATCACCAGAGATGATGGATGAGATAAACTTGAATGGTGCTGCTAATGGTGGTAACAGTAGTGATGATGAAGTAGTGGTTGGAGCAGATGAAGAATTGGATGAAAGCAAAAATAATCTGAATGGTACATCTAGCTCAAGCACAAATTTAAATGGAATAACTGGTAGTGATTCCATGAATGGAGATGCGTTGAACTTTGAAAGCAAAAAGGCAACCACTTCACATGATATGGGATTCTTCAGGTTCGATGCATCAGACAATGAAGAGTTGTTTGGGGACAGGCCTCTGCCTGATTGGGTGGGATGGGGTGAACCTTTAGATATGCAAGATGCAAGCGGAAGCATGAATCCATTTGTAGATCATGATGATTCTGGTAGCAACCTTTCTACTAAATCTCAAACAGGTAGCCCTAATTCTAGTTCTCCTTCAAATGGGGAATCTATTCCGTCGAACAGGTCGCCATCTCCTAAAGATTCAATTGATGGTGGTGTTGACTCGAGTCAAAGATCAGTAGTAGTAGTACCATCTCTCTTTGAAGAAGACGTTGAATTTGTAGGTGTAGAATTGGAAGGTACTGAGAAGGCTATGGAACAGGCTCTAAAAGAAGGAATAGTTGGGGAGGCAGGACCATTGAAAAGAAACATGGTCTCTAAAGTGCCAGAAAAAGAAAGTTCCGAGGAGGGTCCTGGAATAAAGGAATTCAATGATGCAAATTACTGGAGGGTTGACCAGGAGGTTGCTGTTCTGGAGTGA 2553 0.4097 MFWKLASLSASSPVEAILDKENFTLEELLDEEEVIQECKALNSRLINFLRDQAQVEQLLRYIIEEPPEDAESKRAFKFPFISCEIFTCEIDVILKTLVDDEELMNLLFSFLEPNRSHSTLLAGYFSKVVVCLMIRKTVPLMNYVQAHQNVFRQLVDLIGITSIMEVLVRLVGADDHVYHNFIDVMQWLANSNLLEMIVDKLSPSSPPEVHANAAETLCTITRNPSSTLAIKLSSPSFVAKILDHALEVSQSKSSLVNSLSVCVSLLDPKRSAISSPLFHSFRSQHMYEPPIPVNPDTIGAMLPKLGELLVLLNVSSDEKVLPTTYGELRPPLGKHRLKIVEFIAVILKTGNEVAEKEMVNSGIIQRVIDLFFEYPYNNSLHHHVESIILSCLESKTEAIVDHLLRECDLIGRFLQADKHSLLSSDKNLPTVPAAGKQAPRAGNIGHITRIVNKLVHLAHNRSHILTYLQENSEWNEWQATVLQERNVVENVHRWACGRPTALQDRMRDSDDDDLHDRDYDVAALANNLSQAFRYKIYGNEDNEEERGNLDRDEEDVYFDDDSAQVVISSLRLSDDQGSSLFTNSNWFAFQDDRIADGTEGTSPEMMDEINLNGAANGGNSSDDEVVVGADEELDESKNNLNGTSSSSTNLNGITGSDSMNGDALNFESKKATTSHDMGFFRFDASDNEELFGDRPLPDWVGWGEPLDMQDASGSMNPFVDHDDSGSNLSTKSQTGSPNSSSPSNGESIPSNRSPSPKDSIDGGVDSSQRSVVVVPSLFEEDVEFVGVELEGTEKAMEQALKEGIVGEAGPLKRNMVSKVPEKESSEEGPGIKEFNDANYWRVDQEVAVLE 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00520 850 Pfam SIT4 phosphatase-associated protein 131 356 IPR007587 GO:0019903|GO:0043666
Cca10g00520 850 Pfam SIT4 phosphatase-associated protein 357 490 IPR007587 GO:0019903|GO:0043666
Cca10g00520 850 SUPERFAMILY ARM repeat 164 388 IPR016024 -
Cca10g00520 850 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 6 REGULATORY SUBUNIT 2-LIKE ISOFORM X1 1 848 - -
Cca10g00520 850 MobiDBLite consensus disorder prediction 719 767 - -
Cca10g00520 850 MobiDBLite consensus disorder prediction 702 767 - -
Cca10g00520 850 MobiDBLite consensus disorder prediction 638 659 - -
Cca10g00520 850 MobiDBLite consensus disorder prediction 632 659 - -
Cca10g00520 850 PANTHER SIT4 YEAST -ASSOCIATING PROTEIN-RELATED 1 848 IPR007587 GO:0019903|GO:0043666
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00520 Cca-Chr10 5490307 5500429 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00520 K15501 - gmx:100802276 1446.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00520 10 5490307 5500429 Cca10g00520 10 5490307 5500429 ECH
Cca10g00520 10 5490307 5500429 Cca04g00797 04 7933369 7943181 PCT