Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00797 ATGTTCTGGAAGCTCGCCTCCATCTCCTCCTCCTCTCCCGTGGAGGCGATATTGGACAAGGAGAACTTCACTTTGGAAGAAATTCTCGATGAAGAGGAAATAATCCAAGAATGCAAGGCCTTAAACAGTCGTCTCATTAACTTTTTGAGAGATAGAGCTCAGGTTGAGCAATTGCTACGCTACATCATTGAAGAACCACCAGAGGATGCTGAAAACAAACGGATCTTCAAGTTTCCATTCATTGCCTGTGAGATCTTTACATGTGAAATTGATGTAATTTTGAAGACCTTGGTGGATGAAGAAGAGCTCATGAACTTATTATTCTCCTTCTTGGAGCCTGATCGATCTCATAGTACCTTACTGGCCGGGTACTTTAGCAAGGTTGTCGTTTGCTTATTGATACGAAAGACAGTACCACTTATGAATTATGTTCAAGCCCATCAACATGTTTTTCGCCAACTGGTAGATTTGATAGGCATTACATCCATTATGGAGGTTTTGGTTCGATTAGTTGGTGCTGATGACCACGTATATACCAATTTTATAGATGTGATGCAATGGTTGGCTGAGAGCAACCTGCTAGAGATGATTGTCGATAAATTAAGTCCATCTAGTCCTCCTGAAGTTCATGCCAATGTAGCTGAAACATTGTGTACCATTACTCGAGTTGCATCATCTACTCTAGCAATTAAGCTTTCAAGTCCAAGTTTTGTTGCAAAAATTTTGGGTTATGCATTGGAAGATTCACAATCAAAGTCTAGCCTTGTCAACTCGCTCTCAGTGTGTATTTCTTTGTTGGATCCTAAAAAATCAGCTATTTCATCTCCTTTTTTCCATTCATTCCGAAGTCAAAACATGTATGAGCCACCAATACCTGTAAACCCAGATACTATTGGTGCAATGCTACCTAAACTTGGTGAATTTCTTGTGCTTTTGGATGTGTCATCCGATAACAAGGTATTGCCTACAACATATGGCGAATTGAGACCTCCACTTGGCAAGCATCGATTAAAGATTGTGGAGTTTATTGCAGTACTTCTTAAAACTGGAAACGAAGTGGCAGAAAAAGAATTGGCCAACACAGGAACCATTCGACGAGTCATTGATCTTTTCTTTGAGTATCCATACAATAACTCATTACACCATCATGTAGAGAGTATCATATCATCATGTTTGGAGAGCAAATCTGATGCCATTATTGATCATCTTCTTCGAGATTGTGATTTAGTTGGAAGGTTTCTCCAAGCAGATAAACATTGTATTCTTTCTGCTGAAAGCAATCAGCCCACAGTACCTGCTGCTGGAAAACGGGGAACACGGGTAGGAAACATTGGACATATTACCCGCATTTTCAATAAACTTGTTCACTTGGCTCATAACCAAACCCACATTCTGGCATGTCTTCAGGAGAATACTGATTGGAATGAGTGGCAAGCTACAGTTCTTCAGCAGCGTAATGTGGTTGAGAATGTTCACCGTTGGGCTTGTGGGCGTCCAACTGCATTACAAGATAGAATGAGGGATAGTGATGATGAAGACCTTCATGACAGAGACTACGATGTTGCAGCTTTAGCAAATAATTTGAGCCAGGCTTTTAGATACAAAATTTATGGAAATGATGATAATGAAGAGGATCATGGCGGTCTTGATCGAGATGATGAGGATGTCTACTTTGACGATGATTCTGCTGAAGTAGTCATATCATCTTTAAGATTAGGTGATGATCAAGGGAGTAATCTGTTTACAAACTCCAACTGGTTTGCATTCCAAGACGACAGAATTGGTGATGCATCTGGGGGCACATCATCCTCTGAGATGATGGATGAGATAAAATTGAATGCAGCTGCAAATGGTGGTAGCAACAGTAGTGATGATGAGGTAGTGGTTGGAGAGGATGAAGAATTGACTGACACCAATAATACTGTGAATGGTACATCTAGCTCTAGCACGAACTTCTTTAGTGGATTAACTGGTAATGATTCCATGAATGGGGGCACTTTAGACTTAGAAAGTGAGAAGGCAAGTCCTTCACAAGATATGGGATTCTTCAGGTTTGAGGCACCAGACAATGAGGACTTGTTCGGGGATAGGCCCTTACCTGATTGGGTGGGATGGGGTGAACCATCAGATATACAACATGCTGGCTCAAGTATGAATCCCTTTCTGGATCATGCTGAGTCTGGCAGTGATTTGTCTATTGAGTCTCAAGTAGGCAGCCCTAGTCTGAGTTCTCCTTCAGGTGGGGAATCCATACCTTCAAATGGGTCTGCAACTACTAGAGATTCAACCAATGGGGGCAATGACTCAAATCAAACATCAGTAGCAGCACCCTCACTATTTGAAGAGGATGTAGAATTTGTAGGTGTAGAACTAGAAGGTACTGAGAAGGCAATGGACCATGCTCTCAAAGAAGGCGTAGTTGGAGAAGCAGGACCTTTGAAAAAAAACATTGTCTCCAAAGTTCCTGAAAAGGAAAATTCTGAAGAAGGCGGTCCTGGTCTGAAGGAGTTTAACGATTCGAATTACTGGAGGGTTGACAAAGAGGTTGCTGTTCTAGAGTTATGA 2565 0.4148 MFWKLASISSSSPVEAILDKENFTLEEILDEEEIIQECKALNSRLINFLRDRAQVEQLLRYIIEEPPEDAENKRIFKFPFIACEIFTCEIDVILKTLVDEEELMNLLFSFLEPDRSHSTLLAGYFSKVVVCLLIRKTVPLMNYVQAHQHVFRQLVDLIGITSIMEVLVRLVGADDHVYTNFIDVMQWLAESNLLEMIVDKLSPSSPPEVHANVAETLCTITRVASSTLAIKLSSPSFVAKILGYALEDSQSKSSLVNSLSVCISLLDPKKSAISSPFFHSFRSQNMYEPPIPVNPDTIGAMLPKLGEFLVLLDVSSDNKVLPTTYGELRPPLGKHRLKIVEFIAVLLKTGNEVAEKELANTGTIRRVIDLFFEYPYNNSLHHHVESIISSCLESKSDAIIDHLLRDCDLVGRFLQADKHCILSAESNQPTVPAAGKRGTRVGNIGHITRIFNKLVHLAHNQTHILACLQENTDWNEWQATVLQQRNVVENVHRWACGRPTALQDRMRDSDDEDLHDRDYDVAALANNLSQAFRYKIYGNDDNEEDHGGLDRDDEDVYFDDDSAEVVISSLRLGDDQGSNLFTNSNWFAFQDDRIGDASGGTSSSEMMDEIKLNAAANGGSNSSDDEVVVGEDEELTDTNNTVNGTSSSSTNFFSGLTGNDSMNGGTLDLESEKASPSQDMGFFRFEAPDNEDLFGDRPLPDWVGWGEPSDIQHAGSSMNPFLDHAESGSDLSIESQVGSPSLSSPSGGESIPSNGSATTRDSTNGGNDSNQTSVAAPSLFEEDVEFVGVELEGTEKAMDHALKEGVVGEAGPLKKNIVSKVPEKENSEEGGPGLKEFNDSNYWRVDKEVAVLEL 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00797 854 MobiDBLite consensus disorder prediction 614 779 - -
Cca04g00797 854 Pfam SIT4 phosphatase-associated protein 357 490 IPR007587 GO:0019903|GO:0043666
Cca04g00797 854 Pfam SIT4 phosphatase-associated protein 131 356 IPR007587 GO:0019903|GO:0043666
Cca04g00797 854 MobiDBLite consensus disorder prediction 634 673 - -
Cca04g00797 854 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 6 REGULATORY SUBUNIT 3-LIKE ISOFORM X1 1 851 - -
Cca04g00797 854 MobiDBLite consensus disorder prediction 729 777 - -
Cca04g00797 854 PANTHER SIT4 YEAST -ASSOCIATING PROTEIN-RELATED 1 851 IPR007587 GO:0019903|GO:0043666
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00797 Cca-Chr4 7933369 7943181 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00797 K15501 - gmx:100805409 1503.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00797 04 7933369 7943181 Cca04g00797 04 7933369 7943181 ECH
Cca10g00520 10 5490307 5500429 Cca04g00797 04 7933369 7943181 PCT