Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00515 ATGCGAAtcctcctcgtgctctccctcgccaccctcctcctcttctcctccgtctctcccaccctctcCGCCGACACCGCCGACGACGAGGACCTCAGCTTCCTCGAAGACGAGCCCTCCGCGCCGCCGCACGCCCAATTCCACGATGACGCTGATTTCGGCGACTTCGAGGACTTCGAGGACTCGGATGCGCACAAGGAGCCCGAGGTGGACGAGAAGGACGTCGTCGTTTTGAAGGCCAGCAATTTCACCGACGTCGTCAAGAGCAACCGCTTCGTCATGGTCGAATTCTACGCTCCCTGGTGCGGCCACTGCCAGGCCCTCGCGCCGGAATACGCCGCCGCCGCAACGGAGCTCAAGGGCGAGAATGTCGTTCTGGCGAAGGTGGATGCCACGGAGGAGACTGAATTGGGGCAGCAGTACGATGTTCAGGGTTTCCCCACTGTCTACTTCTTCATCGATGGAATTCACAAGCCTTATAATGGCCAAAGGACCAAAGATGCTATAGTGTCTTGGATTAAGAAGAAGACGGGACCTGGTCTATACAACATAACTACATTGGAAGACGCTCAAAGCATTTTGACCAACGAAACTAAAGTTGTTTTGGGCTTCCTCAATTCTTTAGTTGGTTCTGAGAGTGAGGAGCTTGCTGCCGCATCAAGACTTGAGGATGATGTCAGTTTTTATCAAACTGTGAATCCTGATGTGGCAAAGCTTTTCCATATTGATCCAGAAGTCAAACGCCCAGCTTTAATCCTTATCAAGAAAGAGGAGGAAAAACTTAACCACTTTGATGGTAAATTTGAGAAGTCGGCAATAGCGGACTTTGTCTTCTCCAACAAGTTACCTTTGGTAACAATTTTTACTCAAGAAAGTGCCCCATCAGTCTTCGAAAATCCAATCAAGAAACAGGTGTTGCTGTTTGCAACTTCAAATGATTCAGAGAAGTTAATCTCAGTATTTCAAGAAGCAGCAAAATCTTTTAAGGGAAAGTTGATCTTTGTATATGTCGAAATGGATAATGATGATGTTGGAAAGCCTGTTTCAGAATACTTCGGTATCAGTGGGAATGCTCCTAAAGTACTTGCTTACACCGGAAATGATGATGGAAGAAAATTTGTGCTTGATGGAGAGGTGACTGTTGACAAAATTAAGGCATTTGGGGAAGATTTCCTCGGAGATAAGCTAAAACCCTTTTACAAGTCAGATCCAGTTCCTGAAAGTAATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTCCTTGAGATTTATGCTCCCTGGTGTGGCCATTGCCAATCACTGGAGCCAATATACAACAAGCTTGGAAAACATCTTCGTGATATTGATTCTCTTGTAATAGCCAAGATCGATGGAACAACAAATGAGCATCCCAGGGCGAAGCCTGATGGATTCCCTACTCTTCTCTTCTTCCCAGCAGGAAACAAGAGTTTTGACCCCATTACTGTTGAAACAGATCGTACAGTGGTAGCATTCTACAAGTTCCTCAAGAAACATGCATCAATCCCGTTCAAGCTCCAGAAACCAACCTCAACTTCTGAATCCGGGAGTTCTGATGCCAAAGAGAGCCAGAGTAGCAGTAGTGATGTGAAGGATGAGTTGTAA 1662 0.4398 MRILLVLSLATLLLFSSVSPTLSADTADDEDLSFLEDEPSAPPHAQFHDDADFGDFEDFEDSDAHKEPEVDEKDVVVLKASNFTDVVKSNRFVMVEFYAPWCGHCQALAPEYAAAATELKGENVVLAKVDATEETELGQQYDVQGFPTVYFFIDGIHKPYNGQRTKDAIVSWIKKKTGPGLYNITTLEDAQSILTNETKVVLGFLNSLVGSESEELAAASRLEDDVSFYQTVNPDVAKLFHIDPEVKRPALILIKKEEEKLNHFDGKFEKSAIADFVFSNKLPLVTIFTQESAPSVFENPIKKQVLLFATSNDSEKLISVFQEAAKSFKGKLIFVYVEMDNDDVGKPVSEYFGISGNAPKVLAYTGNDDGRKFVLDGEVTVDKIKAFGEDFLGDKLKPFYKSDPVPESNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQSLEPIYNKLGKHLRDIDSLVIAKIDGTTNEHPRAKPDGFPTLLFFPAGNKSFDPITVETDRTVVAFYKFLKKHASIPFKLQKPTSTSESGSSDAKESQSSSSDVKDEL 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00515 553 ProSitePatterns Thioredoxin family active site. 433 451 IPR017937 -
Cca10g00515 553 PANTHER PROTEIN DISULFIDE ISOMERASE 53 539 - -
Cca10g00515 553 ProSiteProfiles Thioredoxin domain profile. 47 178 IPR013766 -
Cca10g00515 553 CDD PDI_b'_family 302 392 - -
Cca10g00515 553 Gene3D Glutaredoxin 407 521 - -
Cca10g00515 553 TIGRFAM ER_PDI_fam: protein disulfide isomerase 73 553 IPR005792 GO:0003756
Cca10g00515 553 Gene3D Glutaredoxin 282 406 - -
Cca10g00515 553 Pfam Thioredoxin 75 175 IPR013766 -
Cca10g00515 553 Pfam Thioredoxin 413 500 IPR013766 -
Cca10g00515 553 MobiDBLite consensus disorder prediction 526 543 - -
Cca10g00515 553 MobiDBLite consensus disorder prediction 526 553 - -
Cca10g00515 553 Gene3D Glutaredoxin 180 281 - -
Cca10g00515 553 ProSiteProfiles Thioredoxin domain profile. 390 520 IPR013766 -
Cca10g00515 553 CDD PDI_b_family 183 280 - -
Cca10g00515 553 SUPERFAMILY Thioredoxin-like 182 292 IPR036249 -
Cca10g00515 553 Pfam Thioredoxin-like domain 216 387 - -
Cca10g00515 553 CDD PDI_a_PDI_a'_C 413 515 - -
Cca10g00515 553 PANTHER PROTEIN DISULFIDE-ISOMERASE 53 539 - -
Cca10g00515 553 CDD PDI_a_family 76 173 - -
Cca10g00515 553 Gene3D Glutaredoxin 59 179 - -
Cca10g00515 553 PRINTS Thioredoxin family signature 93 101 - -
Cca10g00515 553 PRINTS Thioredoxin family signature 101 110 - -
Cca10g00515 553 PRINTS Thioredoxin family signature 142 153 - -
Cca10g00515 553 SUPERFAMILY Thioredoxin-like 408 520 IPR036249 -
Cca10g00515 553 SUPERFAMILY Thioredoxin-like 280 410 IPR036249 -
Cca10g00515 553 ProSitePatterns Thioredoxin family active site. 94 112 IPR017937 -
Cca10g00515 553 TIGRFAM pdi_dom: protein disulfide-isomerase domain 78 176 IPR005788 GO:0003756
Cca10g00515 553 SUPERFAMILY Thioredoxin-like 68 178 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00515 Cca-Chr10 5386067 5390534 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00515 K09580 - gmx:100804924 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00515 10 5386067 5390534 Cca10g00515 10 5386067 5390534 ECH
Cca10g00515 10 5386067 5390534 Cca04g00785 04 7805507 7814211 ECH
Cca10g00515 10 5386067 5390534 Cca04g00785 04 7805507 7814211 PCT