Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00785 ATGCCAACTCTTACACGACTTGTCGTTtcgctctctctcgctactctcttactcctatcctccttctctctcactctctGCAACAAAGCCCCGCAAAacgacaacgacgacgacgacgaagaTCTCAGCTTCCTCGAGGAGCCCCATGACGCCACCGCCACTTCTCACCACCACTTCCCAGATCCCGACCAATTTGACGACGACGACGGCGACGACGCCGACGACTTCGGGGACTTCTCCGGCTACGACCCCTCCGCCGACGAAGCCTTCGCCGACCCCGCGGTCGACGACAAGGACGTCGTCGTTTTGAAGGAGCGCAACTTCACCACCGTCGTCGAGAACAACCGCTTCGTCATGGTCGAGTTCTACGCGCCCTGGTGTGGCCACTGCCAGGCCCTCGCGCCGGAGTACGCCGCTGCCGCCACCGAGCTCAAGCCCGACGGCGTCGTTCTCGCCAAGGTCGACGCCACCGTCGAGAACGAGCTGGCTCACGAGTACGACGTGCAGGGTTTCCCCACCGTCTTCTTCTTCGTCGACGGCGCTCACAAGCCTTACACTGCCCAGAGAACTAAAGACGCGATAGTGACATGGATTAGGAAGAAGATAGGACCTGGTGTGTCCAACATAACCACGTTGGATGATGCTGAAAGCGTGTTGACCTCTGAAAGTAGAGTTGTTTTGGGCTTCCTAAACTCTTTAGTTGGTGCTGAAAGTGACGAGCTGGCTGCAGCATCAAAGCTTGAGGATGATGTCAATTTTTATCAAACTGTGGTACCTGAAGTGGCAAAGCTTTTTCATATTGATGCGAGTGCTAAACGCCCTGCATTGATCTTGCTCAAGAAAGAGGAGGAGAAATTGAACCATTTTGATGGTGAATTTGTAAAAGCTGAAATAGCCGAATTTGTGTCCTCCAACAAGCTTCCTTTGGTTACAACTTTTACGAGAGAAAACGCCCCATCAATCTTTGAAAGTCAAATCAAGAAACAGTTGTTGCTGTTTGTGACATCAAATGATACAGAGAAGTTCCTTCCAGTATTTAAAGAAACAGCAAAACTTTTCAAGGGAAAGCTGATCTTTGTTCATGTGGAAATGGATAATGAAGATGTTGGAAAGCCTGTTGCAGATTATTTTGGCCTCGCAGGGAATGCTCCCAAAGTGCTTGCATACACAGGAAATGATGATGGAAGAAAATTTTTGCTTGATGGAGAGGTTACTGTTGACACAATTACGGCGTTTGGTAAAGATTTTCTTGAAGACAAGCTAAAACCTTTCCTGAAGTCAGATCCAGTTCCTGAAAGTAATGATGGTGATGTGAAAATAGTTGTTGGGAATAGCTTTGATGAAATTGTCTTGGACGAGTCAAAGGATGTTCTGCTTGAGGTTTATGCTCCTTGGTGTGGTCACTGCCAATCCCTGGAACCAACATACAACAAGCTTGCTAAACATCTCAGCAGCATTGAGTCTATTGTTATAGCCAAGATGGACGGAACAACAAATGAGCATCCCAGGGCCAAGGCTGATGGATTCCCCACTCTTCTCTTCTTCCCTGCAGGAAACAAGACTTCTGACCCTATTCCTGTTGATGTGGATCGTACAGTGGTAGCCTTTTATAAGTTCCTCAGGAAACATGCATCAATCCCATTCAAGCTCCAGAAACCCACCTCAACCTCTAAATCCGGTAGTGGGAGTTCTGATGTCAAGGAGAGCCAAAGCAGCAGCACCGACGTGAAAGATGAATTATTTGTACCTGGAGTTGCCAAAGAAGTGCATCGCGCTGCCTCACCGTTCTTTACACTCGCCACGTGTCCTCCATCGCCGTTCCAATCCACATTCCCCCCAATCACCACCCTCCGATCCGCACGAATCCCAAAGCCTCACCCCTTATATAAACCGCACTCATCATTTCGCGTCCTCACACTTTTCCAGATCCATCCACCGCTTCATTCCGTTCCGTTCAAACAGTTCCTCTTTCTCACACTCGTTTCAATCTCAGATCCAACACTGTTCAATCCAAATTCAATGGCCAATCCTGCAACCGCCGCATTCTCCGCTCTTCTTCTCCTCTTTTCTTTGCTAGTCAACATCGCCGCCGAATCGCCGGCGCCGACGCCGGCGCCGCATTTGTCACCGTCTTTTTCTCCTACTCCGTCGTCGTCACCGTCGCCTTCTAACGATGTCACTCCTGCATCGAACCCTTCCCCAGCCGGTCCACCGGAATCTCCATCTCCGGCGCCTTCTCATCACGATTCGCCGCCGTCTCCTTCGCCGGGGAGCACTCCTTCTCCTTCTCCGGCTCCGAATACGACTCCGGCGGATGCAGGAGGTGACGGAGTTAACCGCTCCAACGTGGACGGCGGCGACGGTAAATCGTCCTCCTCCGGCGGAGGAATGAGTTCCGGCAAGAAAGCGGGGATAGCGGTGGGAGTGATCGTTGGCGCCGGCGTGGTGGCGTTGGGAGCAGTGGTTTACAAGAAGCGCCGGCAGAACATTCAACGGTCGCAGTACGGTTACGCGGCGAGGAGAGAACTTCTGTAG 2535 0.497 MPTLTRLVVSLSLATLLLLSSFSLTLCNKAPQNDNDDDDEDLSFLEEPHDATATSHHHFPDPDQFDDDDGDDADDFGDFSGYDPSADEAFADPAVDDKDVVVLKERNFTTVVENNRFVMVEFYAPWCGHCQALAPEYAAAATELKPDGVVLAKVDATVENELAHEYDVQGFPTVFFFVDGAHKPYTAQRTKDAIVTWIRKKIGPGVSNITTLDDAESVLTSESRVVLGFLNSLVGAESDELAAASKLEDDVNFYQTVVPEVAKLFHIDASAKRPALILLKKEEEKLNHFDGEFVKAEIAEFVSSNKLPLVTTFTRENAPSIFESQIKKQLLLFVTSNDTEKFLPVFKETAKLFKGKLIFVHVEMDNEDVGKPVADYFGLAGNAPKVLAYTGNDDGRKFLLDGEVTVDTITAFGKDFLEDKLKPFLKSDPVPESNDGDVKIVVGNSFDEIVLDESKDVLLEVYAPWCGHCQSLEPTYNKLAKHLSSIESIVIAKMDGTTNEHPRAKADGFPTLLFFPAGNKTSDPIPVDVDRTVVAFYKFLRKHASIPFKLQKPTSTSKSGSGSSDVKESQSSSTDVKDELFVPGVAKEVHRAASPFFTLATCPPSPFQSTFPPITTLRSARIPKPHPLYKPHSSFRVLTLFQIHPPLHSVPFKQFLFLTLVSISDPTLFNPNSMANPATAAFSALLLLFSLLVNIAAESPAPTPAPHLSPSFSPTPSSSPSPSNDVTPASNPSPAGPPESPSPAPSHHDSPPSPSPGSTPSPSPAPNTTPADAGGDGVNRSNVDGGDGKSSSSGGGMSSGKKAGIAVGVIVGAGVVALGAVVYKKRRQNIQRSQYGYAARRELL 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00785 844 CDD PDI_a_family 101 198 - -
Cca04g00785 844 SUPERFAMILY Thioredoxin-like 95 203 IPR036249 -
Cca04g00785 844 Pfam Thioredoxin 438 522 IPR013766 -
Cca04g00785 844 Pfam Thioredoxin 100 200 IPR013766 -
Cca04g00785 844 Gene3D Glutaredoxin 433 546 - -
Cca04g00785 844 TIGRFAM pdi_dom: protein disulfide-isomerase domain 104 201 IPR005788 GO:0003756
Cca04g00785 844 MobiDBLite consensus disorder prediction 701 801 - -
Cca04g00785 844 MobiDBLite consensus disorder prediction 46 64 - -
Cca04g00785 844 CDD PDI_a_PDI_a'_C 438 540 - -
Cca04g00785 844 MobiDBLite consensus disorder prediction 33 78 - -
Cca04g00785 844 SUPERFAMILY Thioredoxin-like 305 435 IPR036249 -
Cca04g00785 844 ProSiteProfiles Thioredoxin domain profile. 424 545 IPR013766 -
Cca04g00785 844 CDD PDI_b_family 206 305 - -
Cca04g00785 844 Gene3D Glutaredoxin 89 202 - -
Cca04g00785 844 ProSitePatterns Thioredoxin family active site. 119 137 IPR017937 -
Cca04g00785 844 PRINTS Thioredoxin family signature 167 178 - -
Cca04g00785 844 PRINTS Thioredoxin family signature 118 126 - -
Cca04g00785 844 PRINTS Thioredoxin family signature 126 135 - -
Cca04g00785 844 TIGRFAM ER_PDI_fam: protein disulfide isomerase 98 580 IPR005792 GO:0003756
Cca04g00785 844 Pfam Thioredoxin-like domain 241 414 - -
Cca04g00785 844 ProSitePatterns Thioredoxin family active site. 458 476 IPR017937 -
Cca04g00785 844 MobiDBLite consensus disorder prediction 784 798 - -
Cca04g00785 844 PANTHER PROTEIN DISULFIDE-ISOMERASE 5 572 - -
Cca04g00785 844 ProSiteProfiles Thioredoxin domain profile. 79 203 IPR013766 -
Cca04g00785 844 Gene3D Glutaredoxin 302 432 - -
Cca04g00785 844 MobiDBLite consensus disorder prediction 731 767 - -
Cca04g00785 844 MobiDBLite consensus disorder prediction 703 717 - -
Cca04g00785 844 MobiDBLite consensus disorder prediction 551 575 - -
Cca04g00785 844 PANTHER PROTEIN DISULFIDE ISOMERASE 5 572 - -
Cca04g00785 844 SUPERFAMILY Thioredoxin-like 434 545 IPR036249 -
Cca04g00785 844 MobiDBLite consensus disorder prediction 551 570 - -
Cca04g00785 844 CDD PDI_b'_family 317 417 - -
Cca04g00785 844 Gene3D Glutaredoxin 203 301 - -
Cca04g00785 844 SUPERFAMILY Thioredoxin-like 209 317 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00785 Cca-Chr4 7805507 7814211 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00785 K09580 - gmx:100790223 923.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00785 04 7805507 7814211 Cca04g00785 04 7805507 7814211 ECH
Cca10g00515 10 5386067 5390534 Cca04g00785 04 7805507 7814211 ECH
Cca10g00515 10 5386067 5390534 Cca04g00785 04 7805507 7814211 PCT