Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00492 ATGGGAAGCAGAGTGAGCCTCTTGATCTTGTTCCTCGTTCTTTGTCATAGCTTGTCAGTGACAATGGGGCGGTTCTGGAGGAAAGAGGTGGAAGAGAGAGAAGATCCAGACAAATTGTTCTTGATGCTCAAATCCAAGCGCGTTGCCAAAACTGACGCTGGGGAGATGAGAGTGCTCGAAAGCTATGGTGGTAGGGTTTCGGAGAGAAGCTTGCACATTGGTTTCATCACTATGGAACCAAGGTCCCTCTTCGTTCCTCAGTACCTCGACTCCACTATGATCATATTCCTGCGTTCAGGGGAAGCAAAGGTGGGATTCATATACAGAGACAGGTTGGCAGAAAGGCATTTGAAGATGGGAGATGTATATCAAATTCCAGCAGGTTCTGCATTCTATCTGGTGAACATGGAGGATCAAAAGCTTGACATTATCTGTAGCATTGACCCCTCTGAGAGCTTAGGAGTTGATATTTTCCAGTCCTTCTATATTGGAGGAGGAGCCCATCCAGCCTCAGTCCTTTCTGGATTCGAGCCTGAAATCCTTGAAGCTGCTTTTAACGCATCAGGAGCAGAGTTGAGAAAACTCTTCACTAGGCAATACGAGGGCCCAATTGTGCATGTGGGCGATTCACATGCCACAAGCATATGGACCAAGTTCCTTGAACTTAAAGAGGAAGATAAACTTGAGCACATgagggagatgatgcaagaagaagaagaggaagacgaagtggaggaagaggaagaatctggtgaagaagaagagcaaCAAACAAGATGGTCATGGAGGAAGCTGTTGGAAACTGTATTTGGAGATGAGGCGGTGAGGAGGGAGAAGGGTACTAGAAGACCCCCTCGCTCTTGCAACCTGTATGAGCGAAAGCCAGATTTCGAAAACAGGTATGGCTGGAGCGTTGCTATTGATGGCTCTCATTATTTTCCACTCAAAAGGTCTGGCGTTGGGCTTTACCATGTGAATCTCTCAGCGGGATCAATGATGGCACCCCATATGAATCCAAGGGCAACAGAGTACGGCATAGTGCTAAAAGGGACAGGGAGAATCCAAATAGTGTTTCCAAACGGAAGCAATGCAATGGACGCAGAGATAAAAGAAGGGGACGTGTTCTTCATTCCAAGGTACTTTGCGTTCTGCCAAATGGCATCAAGGGGTCAACCACTAGAGTTCTTCGGCTTCACCACCTCGGCTCAGAGGAACAGGCCACAGTTTCTTGTGGGTGCCACGTCACTGATGAGGACCATGCTGGGGCCCGAGCTTGCGGCTGCGTTTGGCGTCACCCAAGAAACCATGCGACGCGTCGCCAATGCACAACACGAAGCTCTGATTCTACCCATAACATCATCATCATCGGCTTCTCATTCCCATTTTCCTAGTGCTAGCTACTCAGAATAA 1410 0.456 MGSRVSLLILFLVLCHSLSVTMGRFWRKEVEEREDPDKLFLMLKSKRVAKTDAGEMRVLESYGGRVSERSLHIGFITMEPRSLFVPQYLDSTMIIFLRSGEAKVGFIYRDRLAERHLKMGDVYQIPAGSAFYLVNMEDQKLDIICSIDPSESLGVDIFQSFYIGGGAHPASVLSGFEPEILEAAFNASGAELRKLFTRQYEGPIVHVGDSHATSIWTKFLELKEEDKLEHMREMMQEEEEEDEVEEEEESGEEEEQQTRWSWRKLLETVFGDEAVRREKGTRRPPRSCNLYERKPDFENRYGWSVAIDGSHYFPLKRSGVGLYHVNLSAGSMMAPHMNPRATEYGIVLKGTGRIQIVFPNGSNAMDAEIKEGDVFFIPRYFAFCQMASRGQPLEFFGFTTSAQRNRPQFLVGATSLMRTMLGPELAAAFGVTQETMRRVANAQHEALILPITSSSSASHSHFPSASYSE 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00492 469 CDD cupin_7S_vicilin-like_N 48 207 - -
Cca10g00492 469 Pfam Cupin 48 191 IPR006045 -
Cca10g00492 469 Pfam Cupin 289 436 IPR006045 -
Cca10g00492 469 Gene3D Jelly Rolls 28 218 IPR014710 -
Cca10g00492 469 CDD cupin_7S_vicilin-like_C 295 446 - -
Cca10g00492 469 MobiDBLite consensus disorder prediction 235 254 - -
Cca10g00492 469 PANTHER OS03G0336100 PROTEIN-RELATED 1 457 - -
Cca10g00492 469 Gene3D Jelly Rolls 280 451 IPR014710 -
Cca10g00492 469 SUPERFAMILY RmlC-like cupins 4 446 IPR011051 -
Cca10g00492 469 PANTHER OS03G0336100 PROTEIN 1 457 - -
Cca10g00492 469 SMART Cupin_1_3 288 437 IPR006045 -
Cca10g00492 469 SMART Cupin_1_3 41 193 IPR006045 -
Cca10g00492 469 MobiDBLite consensus disorder prediction 232 258 - -
Cca10g00492 469 Coils Coil 220 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00492 Cca-Chr10 5126807 5129085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00492 72 455 Miscellaneous Gene Families AT2G18540 28.643 4.19e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00492 - - gmx:100818796 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00492 10 5126807 5129085 Cca10g00492 10 5126807 5129085 ECH
Cca10g00492 10 5126807 5129085 Cca04g00746 04 7480117 7484364 PCT