Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00746 ATGTCTACACATAACATCGCCAGCAAACCCTCCAAGCTCTACATGCATGCCACGTGTCTCTCTATGTTCTCTTCACAATCCCTTCATAAACCACCACATTTTCTTTCATCTTCAATCTTCATCAATTGCATGTGCCATCAACACACATTCATGGCAAACAGAACCACCCTTTTGCTCTTTCTCTTTGTTCTCTGCCATGGAGTGGCCTTAACAATGGCCCTCCTTGAAGATGAAGAGTCATCAAACAATTTGTTCATGATGCACAACTCCAAGATAGTGGTGGAGACTGAGTTTGGTGAAATGAGAGTACTGAAAAGCCATAGGGATGTGATTTTGGATAGGCGCATGCACATTGGTTTCATCACTATGGAACCCAAGACCTTGTTCGTTCCTCAGTACCTTGATTCTAATCTCATCATATTTATCCGTAGAGGGGAAGCAAAGTTGGGATTCATATATGATGATGAACTAGCAGAAAAGAAGTTGAAGACAGGGGATGTATATGTGATTCCAGCGGGTTCAGCATTTTATTTGGTGAATATTGGGGAAGGTCAGAGACTTAACATCATTTGCAGCATTGACCCCTCTACACACTTGGGACTAGATACCTTCCAGTCCTTCTATATTGGAGGAGGAGCCAAATCACACTCGGTGCTTTCTGGATTCGAATCTGTGATCCTTGAAACTGCATTTAACGAATCAAGAACAGAGATAGAGCAAATCTTCTCCGCAAAACTAGATGGGCCATTTGTGTACGTGGGTGATTCTCATGCACCTAGCTTGTGGACTAAATTTCTTCAACTGAAGAACGAAGACAAAGTGCAACACATGAAGAAAATGGTGCAAGACCAAGAAGAAGAAGAAGATGATGTTGATGGTGGTGATGAAGAGAAGAAAACAACTAAGCTATGGAGGAAGCTCTTGGAAACTGTATTTGGGAAGGTGAATGAGAAGGCAAGGAACAAAGACACTAATGGTCCCCCTGACTCTCACAACCTCTATGACAAAAAACCTGATTTCAGTAACGCTTATGGTTGGAGCAAGACACTGCATGGAGACGACTATCATCAACTCAGAAAACCTGACGTTGGAATTTTTCATGTCAACCTCACTGCGGGATCCATGTTGTCACCTCATGTAAATCCAAGAGCAGCTGAGTATTGCATAGTGCTGAGAGGTTATGGTAAATTTCAATTAGTGTTTCCAAACGGAAGCAATGCAATGAACATTCAAATCAAAGCAGGGGACGTGTTTGTGGTGCCAAGATACTTCCCCTTCTGTCAAATAGCATCAAGGGATGGACCCTTAGAGTTCTTTGGCTTCTCCACCTCATCCAGGAAGAACAATCCACAGTTTCTGGCTGGTTCTATGTCCCTTCTTAGGACCTTGATGGGGCCGGAGCTTGCGGCGGCTTTCGGTGTCAGCGAGGGCACACTGCGGCGAGCCCTTGATGCTCAGCATGAGGCTGTGATACTTCCATCAACATGGGCTGCACCACCAGAAAATGCAGGGAAGATGAAGAAGGTGCACATGAGTCCAAAGGGAATCAGAACTTAG 1557 0.4425 MSTHNIASKPSKLYMHATCLSMFSSQSLHKPPHFLSSSIFINCMCHQHTFMANRTTLLLFLFVLCHGVALTMALLEDEESSNNLFMMHNSKIVVETEFGEMRVLKSHRDVILDRRMHIGFITMEPKTLFVPQYLDSNLIIFIRRGEAKLGFIYDDELAEKKLKTGDVYVIPAGSAFYLVNIGEGQRLNIICSIDPSTHLGLDTFQSFYIGGGAKSHSVLSGFESVILETAFNESRTEIEQIFSAKLDGPFVYVGDSHAPSLWTKFLQLKNEDKVQHMKKMVQDQEEEEDDVDGGDEEKKTTKLWRKLLETVFGKVNEKARNKDTNGPPDSHNLYDKKPDFSNAYGWSKTLHGDDYHQLRKPDVGIFHVNLTAGSMLSPHVNPRAAEYCIVLRGYGKFQLVFPNGSNAMNIQIKAGDVFVVPRYFPFCQIASRDGPLEFFGFSTSSRKNNPQFLAGSMSLLRTLMGPELAAAFGVSEGTLRRALDAQHEAVILPSTWAAPPENAGKMKKVHMSPKGIRT 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00746 518 CDD cupin_7S_vicilin-like_C 338 489 - -
Cca04g00746 518 SUPERFAMILY RmlC-like cupins 50 489 IPR011051 -
Cca04g00746 518 CDD cupin_7S_vicilin-like_N 93 253 - -
Cca04g00746 518 Pfam Cupin 93 191 IPR006045 -
Cca04g00746 518 Pfam Cupin 331 476 IPR006045 -
Cca04g00746 518 PANTHER OS03G0336100 PROTEIN-RELATED 51 502 - -
Cca04g00746 518 SMART Cupin_1_3 85 239 IPR006045 -
Cca04g00746 518 SMART Cupin_1_3 331 480 IPR006045 -
Cca04g00746 518 PANTHER OS03G0336100 PROTEIN 51 502 - -
Cca04g00746 518 Gene3D Jelly Rolls 76 265 IPR014710 -
Cca04g00746 518 Gene3D Jelly Rolls 334 501 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00746 Cca-Chr4 7480117 7484364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00746 80 492 Miscellaneous Gene Families AT4G36700 29.245 4.39e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00746 - - gmx:547942 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00746 04 7480117 7484364 Cca04g00746 04 7480117 7484364 ECH
Cca10g00492 10 5126807 5129085 Cca04g00746 04 7480117 7484364 PCT