Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00489 ATGAGAAGCAGCAACCACTTGATCGGTCTGCTAAACTTCTTGACCTTCTTGTTGTCATTTCCAATCCTTGGTGGTGGGATATGGCTGAGCATAAGAGCCAACAACACTGAATGCCTCAAATTCCTTCAATGGCCTCTCATCATCATAGCACTCTGCATAATGGCCACTTCCCTAGCTGGTTTGACCGGTTCCTGTTACCGCAATCCCTTCCTCATGATCCTCTACCTCGTTCTCATGTTCTTCATAATCATTCTTCTCATCGGAATCATCACCTTTGCCTATGCTGTCACGGACAAAGGGTCGGGGAGGGAGGTGCAGAATCGCGTTTACTTGGAATATTACTTGCAGGACTATGAGGGTTGGTTGGAGAAACGTGTGGCCAGTGATAGATATTGGACAAAGGTTAGGTCTTGTGTTAGGGACTCTAAGGTTTGTGCTAAGCTTCGGAGAAAGGTGCCTCAAACTGCTGATATGTTCTACCACACAAACCTCTCTCCTATTCAGTCTGGATGTTGCAAGCCTCCAACAGAATGTGGGTATGCGTATCAGAATGAAACAATGTGGAGCCCAGAAGGAGGAGTGATTGGAACCAGTCCAGATTGCAGTAGGTGGAGCAATGACCAAAACTTGCTTTGTTATGAATGTGACTCTTGCAAGGCTGGTGTGTTAGCTACTCTCAAGAAAAGTTGGAGGAAGGTCTCTGTGATTAATATTGTTTTGTTGATTTCCCTTCTCATTGTTTACGCCATCGCTTATAAAGCTTATACAAACAATCGCAAGATAAATAACTGCGAACCCTGCGGTGAAACAAGGATGATAAAATTACAACCTAGTTAA 837 0.4432 MRSSNHLIGLLNFLTFLLSFPILGGGIWLSIRANNTECLKFLQWPLIIIALCIMATSLAGLTGSCYRNPFLMILYLVLMFFIIILLIGIITFAYAVTDKGSGREVQNRVYLEYYLQDYEGWLEKRVASDRYWTKVRSCVRDSKVCAKLRRKVPQTADMFYHTNLSPIQSGCCKPPTECGYAYQNETMWSPEGGVIGTSPDCSRWSNDQNLLCYECDSCKAGVLATLKKSWRKVSVINIVLLISLLIVYAIAYKAYTNNRKINNCEPCGETRMIKLQPS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00489 278 PANTHER TETRASPANIN-3-LIKE 1 275 - -
Cca10g00489 278 PANTHER TETRASPANIN-8-RELATED 1 275 IPR044991 GO:0009734|GO:0016021
Cca10g00489 278 Pfam Tetraspanin family 6 248 IPR018499 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00489 Cca-Chr10 5085193 5093059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00489 1 275 Miscellaneous Gene Families AT5G60220 64.748 1.22e-117 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00489 - - gmx:100820399 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00489 10 5085193 5093059 Cca10g00489 10 5085193 5093059 ECH
Cca10g00489 10 5085193 5093059 Cca04g00738 04 7353254 7357758 PCT