Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00738 ATGAGAACAAGCAACCACTTGATCGGTGTCCTAAACTTCCTAACGTTCCTTCTGTCGATTCCGATCCTGGGCGGCGGCATATGGCTGAGCAGCCGAGCCAACAGCACCGACTGCCTGAGGTTCCTCCAGTGGCCGCTCATCGTGATCGGCGTCAGCATCATGGTGGTGTCGCTCGCGGGGTTCGCCGGCGCCTGCTACCGCAACACGTTCCTCATGCGCCTCTACCTGCTGGTGATGTTCCTGGTCATCGCGGTCCTCATCGGATTCATCATATTCGCGTACGTTGTGACGGACAAAGGGGGCGGTCGAAGAATCACCAACCGCGCCTACTTGGAGTACTACCTTGAGGACTACTCGGGGTGGTTGGAGGAGCGCGTGGCCAGTGATAGCTACTGGGGGAAGATTAGTTCCTGCGTTAGGGATTCTAAGCTTTGTGCCAAAATGGGCAAGACCATTAATGGCGTTCCCGAGACTGCTGATATGTTCTACCTCCGACGGCTCTCGCCTGTTCAGTCTGGTTGCTGCAAGCCCCCAACAGAATGTGGCTATATCTACCAAAATGAGACAGTGTGGAACCTAGGATCAGGTTTGATGGCAGCCAACCCAGATTGCACAAAGTGGAGCAATGACCAAGAACAGCTATGCTATGCCTGTGATTCTTGCAAAGCTGGTGTGCTGGCAAGTCTGAAGAAGAGTTGGAGGAAGGTCTCAGTGATCAACATTGTTGTTATGATAATCCTTGTCATTGTTTACATAATTGCTTATGCAGCATATAGGAACAACCGCAGGATGGATAATGATGAACCCTATGGTGAAGCCAGGATGACAAAGGCACAACCTAGTGCATTTCATCTTTAG 858 0.5175 MRTSNHLIGVLNFLTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIVIGVSIMVVSLAGFAGACYRNTFLMRLYLLVMFLVIAVLIGFIIFAYVVTDKGGGRRITNRAYLEYYLEDYSGWLEERVASDSYWGKISSCVRDSKLCAKMGKTINGVPETADMFYLRRLSPVQSGCCKPPTECGYIYQNETVWNLGSGLMAANPDCTKWSNDQEQLCYACDSCKAGVLASLKKSWRKVSVINIVVMIILVIVYIIAYAAYRNNRRMDNDEPYGEARMTKAQPSAFHL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00738 285 PANTHER TETRASPANIN-3-LIKE 1 279 - -
Cca04g00738 285 PRINTS Transmembrane four family signature 6 29 - -
Cca04g00738 285 PRINTS Transmembrane four family signature 39 65 - -
Cca04g00738 285 PRINTS Transmembrane four family signature 66 94 - -
Cca04g00738 285 PANTHER TETRASPANIN-8-RELATED 1 279 IPR044991 GO:0009734|GO:0016021
Cca04g00738 285 Pfam Tetraspanin family 6 253 IPR018499 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00738 Cca-Chr4 7353254 7357758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00738 1 277 Miscellaneous Gene Families AT5G60220 72.924 3.43e-132 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00738 - - gmx:100788977 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00738 04 7353254 7357758 Cca04g00738 04 7353254 7357758 ECH
Cca10g00489 10 5085193 5093059 Cca04g00738 04 7353254 7357758 PCT