Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00462 ATGGTGTTGGATGGCCCTTTGCTACGACATTCTCTGTTATATAATTGTCAGGTTCTTGTTGCAAGTTCAATTCAGGGATTGCACAACATTCATGGGAGCTTTAATGTACCCAACATGCCCAATACACTTGCATCAAGAAACTTAACAATAAATAGCGTTCTAACTAGGGGAACTCAACAACCTTCGGCAAGCCTTTCTAATGGAAGATTTGCATCAAATAATCTACTTGTTGCGCTCTCACAGCTATCTCACGGAAGCTCCCATGGACACTCAGGAGTCAACAGTAGAGGAGGTATAAATGTTATAAGAAATCCTGGATTTAGTAGTAGCACAGATGGAGTTGCTGGTCCTATTCCTAGGATTCTCCCAACTTCTGTTGCAATTGGTAACCGAAATACTGTTCCAAGATTGGGACTGTCCCTAATTTTGGGAAATGCAGGTCCTCGAATCACTAGTTCGATGGGAAACATGGTTGGTGGGGGGAACATTGGGAGGATAAGCTCTGGAGGATTGTTTATTCCAGGTCTTGCTTCATGTCTAAATTTAAGTGGAAACACTAGATCTGGTGGTTTAGGCCTACAAGGACAAAATCGATTGATGAATGGTGTGCTTCCGCAAGGTATGTATCTTGGTAGTCACAAGCATTGA 648 0.4244 MVLDGPLLRHSLLYNCQVLVASSIQGLHNIHGSFNVPNMPNTLASRNLTINSVLTRGTQQPSASLSNGRFASNNLLVALSQLSHGSSHGHSGVNSRGGINVIRNPGFSSSTDGVAGPIPRILPTSVAIGNRNTVPRLGLSLILGNAGPRITSSMGNMVGGGNIGRISSGGLFIPGLASCLNLSGNTRSGGLGLQGQNRLMNGVLPQGMYLGSHKH 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00462 215 PANTHER NOT TRANSCRIPTION COMPLEX SUBUNIT VIP2-RELATED 34 206 - -
Cca10g00462 215 PANTHER CCR4 NOT-RELATED 34 206 IPR040168 GO:0030015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00462 Cca-Chr10 4754717 4756962 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00462 K12605 - ccaj:109806044 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00462 10 4754717 4756962 Cca10g00462 10 4754717 4756962 ECH
Cca10g00462 10 4754717 4756962 Cca04g00706 04 6957372 6963540 PCT