Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00706 ATGTCGGGGTTACTTAATTCTTCTCTGAATGGATCTGCCTCAAATCTTCCAGATGGTGCTGGGCGGTCTTTTGCTACATCCTTTTCTGGAGCTATTCAAGGATTGCACAATATTCATGGGAGCTTTAATGTTCCAAACATGCCTGGTACACTTGCATCAAGAAACTCAACTATAAATAATGTACCATCGGGGGGTGTTCAACAACCCACTGGAAGCCTTTCTAGTGGAAGATTTACATCCAATAATCTTCCAGTTGCATTGTCTCAGCTATCTCATGGAAGCTCCCATGGACATTCAGGAGTCACCAATAGAGGAGGTATAAGTGTTGTAGGAAACCCTGGATTTAGTAGTAGCACAAATGGAGTTGGTGGTTCTATTCCTGGGATTCTTCCTACATCTGCTGCAGTTGGTAACCGAAATGCTGTTCCAGGATTGGGAGTATCCCCAATTTTGGGAAATGCAGGTCCTCGAATCACAAGTTCTGTGGGAAACATGGTTGGAGGAGGAAATATTGGAAGGACTGGTGCAGGATTGTCTGTGCCTGGTCTTGCATCTCGTCTGAATTTGGGTGCAAACAGTGGATCCGGTGGTTTAGGTATGCAAGGACAGAATCGATTGATGAGTGGTGTGCTTCCACAAGGATCTCCACAGGTAATTTCAATGCTAGGAAATTCTTATCCTAGTGCTGGAGGTCCACTTTCCCAAAGCCATGTTCAAGCAGTAAGTAACTTGAACTCTATGGGGATGTTGAATGATGTGAATACCAATGATAATTCACCTTTTGACATCAATGACTTCCCTCAACTGACAAGTCGTCCGAGTTCTGCTGGAGGGCCTCAAGGACAGTTGGGTTCTTTACGGAAACAGGGTCTTGGTGTTAGTCCCATTGTTCAACAAAACCAAGAGTTTAGCATTCAAAATGAGGATTTCCCAGCTTTACCAGGATTCAAAGGTGGTAATGCAGATTATGCTATGGATATGCACCAGAAAGAACAACTTCATGACAATGCCGTGCCAATGATGCAATCTCAGCATTTCTCTATGGGAAGGTCAGCTGGTTTCAGCTTAGGGGGTACATATTCATCACATCGAACACAACAGCAACAGCATGCTCCTTCAGTCAGTAGTGGCAATGTCTCTTTTTCATCTGTTAACAACCAGGATCTTCTCCATCTACATGGATCAGATATTTTCCCATCTTCACATTCAACCTATCATTCACAGACCAGTGGACCTCCTGGCATTGGATTAAGGCCTCTAAATTCTCCAAATACAGTTTCTGGTATGGGTTCATATGACCAGCTCATCCAGCAATATCAACAGCACCAGAACCAGTCCCAGTTCCGCCTTCAAATGTCAGCTGTAAATCAGTCTTTCAGGGATCAAGGCATGAAGTCTATTCAAACCGCACAATCTACACCAGATCCTTTTGGTTTGCTTGGCTTGTTAAGTGTGATCAGGATGAGTGATCCCGACCTGACATCTCTTGCTCTTGGAATTGATCTTACTACACTGGGCTTAAATTTGAATTCATCAGAAAATCTTCACAAGACCTTTGGGTCTCCATGGTCTGATGAACCAGCCAAGGGCGATCCAGAGTTTAATGTACCACAATGTTATTACGCCAAACAGCCACCTTCTCTACATCAAGGTTATTTTTCCAAGTTTTCGGTGGAAACATTGTTTTACATATTTTACAGCATGCCCAAAGATGAAGCACAATTATATGCCGCTAATGAGCTTTACAACAGAGGTTGGTTTTATCACAAAGAACATCGTTTGTGGTTTATAAGAGTTCCCAACATGGAGCCGCTGGTTAAAACCAACACATACGAGAGAGGATCTTATCACTGTTTCGAACCAAGCATATTTGAAACCGTCCGCAAGGATAATTTTGTTCTTCATTATGAAATGTTGGAAAAGAGACCACATCTGCCTCAACATTGA 1947 0.4299 MSGLLNSSLNGSASNLPDGAGRSFATSFSGAIQGLHNIHGSFNVPNMPGTLASRNSTINNVPSGGVQQPTGSLSSGRFTSNNLPVALSQLSHGSSHGHSGVTNRGGISVVGNPGFSSSTNGVGGSIPGILPTSAAVGNRNAVPGLGVSPILGNAGPRITSSVGNMVGGGNIGRTGAGLSVPGLASRLNLGANSGSGGLGMQGQNRLMSGVLPQGSPQVISMLGNSYPSAGGPLSQSHVQAVSNLNSMGMLNDVNTNDNSPFDINDFPQLTSRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDMHQKEQLHDNAVPMMQSQHFSMGRSAGFSLGGTYSSHRTQQQQHAPSVSSGNVSFSSVNNQDLLHLHGSDIFPSSHSTYHSQTSGPPGIGLRPLNSPNTVSGMGSYDQLIQQYQQHQNQSQFRLQMSAVNQSFRDQGMKSIQTAQSTPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWSDEPAKGDPEFNVPQCYYAKQPPSLHQGYFSKFSVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNMEPLVKTNTYERGSYHCFEPSIFETVRKDNFVLHYEMLEKRPHLPQH 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00706 648 MobiDBLite consensus disorder prediction 249 282 - -
Cca04g00706 648 MobiDBLite consensus disorder prediction 53 78 - -
Cca04g00706 648 PANTHER NOT TRANSCRIPTION COMPLEX SUBUNIT VIP2 ISOFORM X1-RELATED 2 648 - -
Cca04g00706 648 MobiDBLite consensus disorder prediction 249 287 - -
Cca04g00706 648 PANTHER CCR4 NOT-RELATED 2 648 IPR040168 GO:0030015
Cca04g00706 648 Gene3D - 467 648 IPR038635 -
Cca04g00706 648 MobiDBLite consensus disorder prediction 401 429 - -
Cca04g00706 648 Pfam NOT2 / NOT3 / NOT5 family 517 639 IPR007282 GO:0006355
Cca04g00706 648 MobiDBLite consensus disorder prediction 357 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00706 Cca-Chr4 6957372 6963540 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00706 K12605 - gmx:100783662 1214.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00706 04 6957372 6963540 Cca04g00706 04 6957372 6963540 ECH
Cca10g00462 10 4754717 4756962 Cca04g00706 04 6957372 6963540 PCT