Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00461 ATGGCAACACCATCGCTGCCGCCAATAATCGCCCCAAGGAAGAAAATGACAAAACAATTAACAGGAAAAAGGGATGATACGCCCTTGCATTCTGCAGCAAGAGCAGGGAATTTGGCTGTGTTGAAGGAAACCATTTTGGGAACGAATGAGGCTGCATTACGTGAATTATTAGCCAAGCAGAACCAAGATGGAGAAACACCCCTTTATATTGCTGCTGAGTATGGTTATGTTGATGTGGTCAGGGAGATGATTCCGTATTATGATCTTGCTGATGCTGGAATTAAAGCCAGAAATGGTTTTGATGCATTGCACATTGCTGCCAAACAAGGGGATTTAGATGTGCTGAAGATCCTTATGGAGGGTCATCCTGAGTTGTCAATGACTGTGGATCCATCCAACACCACAGCTTTGCACACAGCTGCATTACAAGGGCACACTGAGATAGTGAAATTCATATTGGAGGCAGGGAGTAGTCTTGCAACCATTGCTAGAAGTAATGGTAAAACAGCACTTCATTCTGCTGCAAGAAATGGACATTTAGAGGTTGTGAAGGCACTTCTTGAGAAGGAGCCTGGGGTTGCAACAAGAACCGACAAGAAGGGACAGACAGCACTTCACATGGCAGTGAAGGGGCAGAATCTTGAGGTGGTAGAGGAGTTGATCAATGGAGATCCCTCATCAATAAACATGGTTGATAGTAAGGGAAACACAGCATTGCATATAGCAACTAGGAAGGGCAGAGCTCAGATTGTGAAGTTGCTTCTGGAACAAAAGGAAACGGCTACAAATGCCGTGAATAGGTGCGGTGAAACAGCATTAGACACTGCTGAGAAAACAGGGAACCATGATTTGAAAGTCATTCTACTGGAACATGGTGTTCAGAATGCGAGGACCATAAAGCCCCAGAAGGGCACAACGGCTACTACAGCCCGTGAGTTGAAACAAACGGTGAGTGACATAAAGCACGAAGTCCACCACCAGTTGGAACACACACGCCAAACCAGAAAACGAGTCCAAGGCATTGCCAAACGCATCAACAAAATGCATGTTGAAGGACTCAACAACGCAATCAACTCCACAACTGTGGTGGCAGTGCTAATTGCCACGGTGGCATTTGCTGCTATATTCACGGTCCCCGGCCAATTTGTTGATGACCCTAACAACATTCCTCCAGGGATGTCACTTGCGGTGGTGGTGGTGCAAACTTCGGTTGTGGTTATAGAAAGCAAGGCAAAGAAGCAGATGATGGCTGTGATTAACAAGCTAATGTGGCTGGCTTGTGTTCTTATTTCGGTGGCCTTCTTGGCTTTGTCGTTTGTAGTGGTGGGGAAGGAAGAGAAGTGGTTGGCCATAGGAGTCACCATTATAGGGGCAACCATAATGGCTACGACCTTGGGAACTATGTGTTACTGGGTCATTAGGCATCGCATTGAGGCCTCAAATTTGAGGAACGTACGAAAATCTTCATTGCAAAGCAAGTCCAAGTCTTTTTCAGTCTCGGCTTTTTCAGATTCTGAGCTACTAAACAGTGAGTATAATAAGAAAATGTATGCGATTTAG 1560 0.4551 MATPSLPPIIAPRKKMTKQLTGKRDDTPLHSAARAGNLAVLKETILGTNEAALRELLAKQNQDGETPLYIAAEYGYVDVVREMIPYYDLADAGIKARNGFDALHIAAKQGDLDVLKILMEGHPELSMTVDPSNTTALHTAALQGHTEIVKFILEAGSSLATIARSNGKTALHSAARNGHLEVVKALLEKEPGVATRTDKKGQTALHMAVKGQNLEVVEELINGDPSSINMVDSKGNTALHIATRKGRAQIVKLLLEQKETATNAVNRCGETALDTAEKTGNHDLKVILLEHGVQNARTIKPQKGTTATTARELKQTVSDIKHEVHHQLEHTRQTRKRVQGIAKRINKMHVEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFVDDPNNIPPGMSLAVVVVQTSVVVIESKAKKQMMAVINKLMWLACVLISVAFLALSFVVVGKEEKWLAIGVTIIGATIMATTLGTMCYWVIRHRIEASNLRNVRKSSLQSKSKSFSVSAFSDSELLNSEYNKKMYAI 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00461 519 ProSiteProfiles Ankyrin repeat profile. 132 164 IPR002110 GO:0005515
Cca10g00461 519 ProSiteProfiles Ankyrin repeat profile. 200 222 IPR002110 GO:0005515
Cca10g00461 519 ProSiteProfiles Ankyrin repeat region circular profile. 98 120 - -
Cca10g00461 519 SUPERFAMILY Ankyrin repeat 26 292 IPR036770 -
Cca10g00461 519 SMART ANK_2a 200 230 IPR002110 GO:0005515
Cca10g00461 519 SMART ANK_2a 166 195 IPR002110 GO:0005515
Cca10g00461 519 SMART ANK_2a 98 127 IPR002110 GO:0005515
Cca10g00461 519 SMART ANK_2a 24 53 IPR002110 GO:0005515
Cca10g00461 519 SMART ANK_2a 234 264 IPR002110 GO:0005515
Cca10g00461 519 SMART ANK_2a 268 296 IPR002110 GO:0005515
Cca10g00461 519 SMART ANK_2a 132 161 IPR002110 GO:0005515
Cca10g00461 519 SMART ANK_2a 63 92 IPR002110 GO:0005515
Cca10g00461 519 Gene3D - 11 161 IPR036770 -
Cca10g00461 519 Gene3D - 162 339 IPR036770 -
Cca10g00461 519 ProSiteProfiles Ankyrin repeat region circular profile. 234 256 - -
Cca10g00461 519 Pfam Domain of unknown function 351 387 IPR026961 -
Cca10g00461 519 PANTHER ANKYRIN REPEAT PLANT PROTEIN 8 395 - -
Cca10g00461 519 PANTHER ANKYRIN REPEAT PLANT PROTEIN 393 519 - -
Cca10g00461 519 ProSiteProfiles Ankyrin repeat profile. 63 84 IPR002110 GO:0005515
Cca10g00461 519 ProSiteProfiles Ankyrin repeat profile. 234 256 IPR002110 GO:0005515
Cca10g00461 519 ProSiteProfiles Ankyrin repeat region circular profile. 132 159 - -
Cca10g00461 519 Pfam Ankyrin repeat 235 266 IPR002110 GO:0005515
Cca10g00461 519 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 8 395 - -
Cca10g00461 519 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 393 519 - -
Cca10g00461 519 ProSiteProfiles Ankyrin repeat profile. 166 198 IPR002110 GO:0005515
Cca10g00461 519 ProSiteProfiles Ankyrin repeat region circular profile. 63 84 - -
Cca10g00461 519 ProSiteProfiles Ankyrin repeat region circular profile. 200 222 - -
Cca10g00461 519 Pfam Ankyrin repeats (3 copies) 16 87 IPR002110 GO:0005515
Cca10g00461 519 Pfam Ankyrin repeats (3 copies) 93 159 IPR002110 GO:0005515
Cca10g00461 519 Pfam Ankyrin repeats (3 copies) 166 229 IPR002110 GO:0005515
Cca10g00461 519 ProSiteProfiles Ankyrin repeat region circular profile. 166 189 - -
Cca10g00461 519 ProSiteProfiles Ankyrin repeat profile. 98 130 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00461 Cca-Chr10 4750719 4753869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00461 12 519 Miscellaneous Gene Families AT1G07710 70.599 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00461 - - gmx:100779230 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00461 10 4750719 4753869 Cca10g00461 10 4750719 4753869 ECH
Cca10g00461 10 4750719 4753869 Cca04g00704 04 6938402 6942524 ECH