Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00704 ATGGAGACTCAGACACCAAATGTGCAGCCACAAGCTGCGTCAACAAGCACGCCAAGGAAAAAGATGACCAAACAGTTGACAGGTAAAAAGGATGATACACCTTTGCACTCTGCAGCAAGAGCAGGGAATCTGAGTGTTCTGAAGGACACAGTTAGTGGTGCTGAAGAGGGTGAATTGCGTGCGTTGTTGACAAAGCAGAACCATGCTGGGGAAACAGTTCTTTATGTTGCTGCTGAATATGGCTATGTCGATATGGTTAGGGAGATGATTCAGTATTATGATCTTGCTGATGCTGGAATTAAAGCAAGGAATGGTTTTGATGCACTCCACATTGCTGCCAAACAAGGGGATTTTGATATTGTGAATATCCTAATGGGGGCTCATCCTGAATTGTCAATGACTGTGGATCCATCCAACACCACAGCTCTGCACACTGCTGCAACACAAGGGCATACTGAGATAGTGAAGCTTCTAATGGAAGCAGGTAGTAGTCTTGTAACCATTGCTAGAAGTAATGGGAAAACAGCTTTGCATTCTGCTGGGAGAAATGGACATTTGGAGGTTGTGGAAGCGCTTCTGGAGAAGGAGCCTTCTGTTGCAACGCGGACTGATAAGAAGGGACAGACAGCACTTCACATGGCAGTGAAGGGACAGAACCTGGAGGTGGTGGAGAAGTTGATAAAAGCTGACCCCTCAACAATAAACATGGTTGATAATAAGGGTAACACGGCATTGCATATAGCAACCAGGAAGGGCAGGGCTCAGATTGTTAAGTTGCTTCTTGGACAAGCAGAAACAGATGCATTGGCAATCAATAGATCTGGTGAAACTGCATTAGACACAGCTGAGAAAACCGGGAACTCTGAAGTCAAAGACGTTCTACTCGAACACGGTGTTCGAAGCGCGAAAGCCATAAAGGGTCAGCCAGCAACTGGTACAGCCCGAGAGTTGAAACAAACCGTGAGTGACATAAAACATGAAGTCCACTACCAGTTGGAGCACACACGCCAAACTAGAAGAGGTGTCCAGGGCATAGCCAAACGCATCAACAAAATGCACGCTGAAGGACTCAACAATGCAATCAACTCCACAACTGTGGTTGCAGTCCTCATTGCCACAGTTGCCTTTGCAGCTATTTTCACTGTCCCTGGCCAATTTGCTGATGATCCAAAAACTCTCCCTCCAAGGATGACCCTTGGTGAAGCAAACATAGCCCCACAACCTGCATTTCTCATTTTCTTTGTCTTCGATTCCATCGCCCTCTTCATCTCTTTGGCTGTGGTGGTGGTGCAAACCTCGGTTGTGATCATAGAAAGCAAGGCAAAGAAACAAATGATGGCCATCATTAACAAGCTTATGTGGTTGGCTTGTGTTCTTATTTCTGTGGCCTTCTTGGCACTGTCATTTGTAGTGGTGGGGAAGGACCAGAAGTGGCTTGCAATTGGAGTCACAATCATAGGGACAACTATAATGGCCATTACTTTGGGCACCATGTGTTACTGGGTCATTAGACATCGCATTGAGGCCTCGAATTTAAGGAGCATTCGGAAATCTTCAATGGGAAGCAGGTCAAGGTCTTTTTCAGTGTCAGTTATGTCTGATTCTGAGCTACTAAACAACGAGCACAAGATACTCTACGCGATTTAG 1647 0.459 METQTPNVQPQAASTSTPRKKMTKQLTGKKDDTPLHSAARAGNLSVLKDTVSGAEEGELRALLTKQNHAGETVLYVAAEYGYVDMVREMIQYYDLADAGIKARNGFDALHIAAKQGDFDIVNILMGAHPELSMTVDPSNTTALHTAATQGHTEIVKLLMEAGSSLVTIARSNGKTALHSAGRNGHLEVVEALLEKEPSVATRTDKKGQTALHMAVKGQNLEVVEKLIKADPSTINMVDNKGNTALHIATRKGRAQIVKLLLGQAETDALAINRSGETALDTAEKTGNSEVKDVLLEHGVRSAKAIKGQPATGTARELKQTVSDIKHEVHYQLEHTRQTRRGVQGIAKRINKMHAEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFADDPKTLPPRMTLGEANIAPQPAFLIFFVFDSIALFISLAVVVVQTSVVIIESKAKKQMMAIINKLMWLACVLISVAFLALSFVVVGKDQKWLAIGVTIIGTTIMAITLGTMCYWVIRHRIEASNLRSIRKSSMGSRSRSFSVSVMSDSELLNNEHKILYAI 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00704 548 MobiDBLite consensus disorder prediction 1 35 - -
Cca04g00704 548 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Cca04g00704 548 PANTHER ANKYRIN REPEAT PLANT PROTEIN 9 548 - -
Cca04g00704 548 SMART ANK_2a 104 133 IPR002110 GO:0005515
Cca04g00704 548 SMART ANK_2a 69 98 IPR002110 GO:0005515
Cca04g00704 548 SMART ANK_2a 206 236 IPR002110 GO:0005515
Cca04g00704 548 SMART ANK_2a 138 168 IPR002110 GO:0005515
Cca04g00704 548 SMART ANK_2a 172 201 IPR002110 GO:0005515
Cca04g00704 548 SMART ANK_2a 30 61 IPR002110 GO:0005515
Cca04g00704 548 SMART ANK_2a 274 304 IPR002110 GO:0005515
Cca04g00704 548 SMART ANK_2a 240 270 IPR002110 GO:0005515
Cca04g00704 548 ProSiteProfiles Ankyrin repeat region circular profile. 172 195 - -
Cca04g00704 548 ProSiteProfiles Ankyrin repeat profile. 138 170 IPR002110 GO:0005515
Cca04g00704 548 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 9 548 - -
Cca04g00704 548 ProSiteProfiles Ankyrin repeat region circular profile. 240 261 - -
Cca04g00704 548 Pfam Ankyrin repeats (3 copies) 109 199 IPR002110 GO:0005515
Cca04g00704 548 Pfam Ankyrin repeats (3 copies) 211 299 IPR002110 GO:0005515
Cca04g00704 548 Pfam Ankyrin repeats (3 copies) 21 92 IPR002110 GO:0005515
Cca04g00704 548 ProSiteProfiles Ankyrin repeat region circular profile. 104 125 - -
Cca04g00704 548 Gene3D - 19 130 IPR036770 -
Cca04g00704 548 ProSiteProfiles Ankyrin repeat profile. 240 261 IPR002110 GO:0005515
Cca04g00704 548 Gene3D - 131 199 IPR036770 -
Cca04g00704 548 ProSiteProfiles Ankyrin repeat region circular profile. 206 228 - -
Cca04g00704 548 ProSiteProfiles Ankyrin repeat region circular profile. 138 165 - -
Cca04g00704 548 MobiDBLite consensus disorder prediction 1 22 - -
Cca04g00704 548 Pfam Domain of unknown function 355 471 IPR026961 -
Cca04g00704 548 ProSiteProfiles Ankyrin repeat profile. 206 228 IPR002110 GO:0005515
Cca04g00704 548 Gene3D - 200 298 IPR036770 -
Cca04g00704 548 ProSiteProfiles Ankyrin repeat profile. 104 136 IPR002110 GO:0005515
Cca04g00704 548 SUPERFAMILY Ankyrin repeat 34 299 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00704 Cca-Chr4 6938402 6942524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00704 13 548 Miscellaneous Gene Families AT1G07710 70.709 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00704 - - gmx:100808971 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00704 04 6938402 6942524 Cca04g00704 04 6938402 6942524 ECH
Cca10g00461 10 4750719 4753869 Cca04g00704 04 6938402 6942524 ECH