Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00460 ATGGAGTTCCTCACTTTACTTTATGGTGCTACAGCATTGTACTTGTGCTTCCTGATCTGGAAGTTGTTTGATCAGAGAAGGGACCGAGAGTGTTACATATTGGACTACCAACTCTACAAGCCAAGCGATGAGAGAAAGCTTGGAACCGAGTGTTGTGGCAAGATCATAGGGAGGAACAAGCACTTGGGTCTGAACGAGTACAAGTTCCTCCTCAAAGCCGTTGTCAACTCTGGCATAGGTGAAGAAACTTATGCTCCAAGCAACGTCATCGAGGGTCGTGAGGCAAATCCAACGTTGCTCGATGGTGTTACTGAGATGGAGGAGTTTTTCCACGACAGCATTGCCAAGCTTCTTGCGAGGTCTGGCATGTCCCCCTCACAGATCGATGTCCTTGTGGTGAATGTCTCTATGTTCGCTTGTGTTCCTTCTTTGACTTCCAGGATCATCAACCATTACAAAATGAGGGATGACATAAAGGCTTATAACCTCACTGGTATGGGGTGTAGTGCTAGCCTTATCTCATTGGACATCATAAGAAACGTGTTCAAGTCCCAGAAGAACAAGTGTGCTCTTTTGGTCACTTCTGAATCTCTGAGTCCAAACTGGTACGATGGCAACGACAGATCAATGATTCTTGCCAACTGTTTGTTCAGGACTGGGGGTTGTGTCATACTTTTGACAAACAAAAGGTCCTTGAAGCACAAAGCCATGTTGAGGTTGAAGTGCTTGGTGAGGACTCATCATGGGGCTAGAGAAGACGCTTATAGTTGCTGCAACCAGAAGGAGGATGAGCAAGGAAGGCTTGGATTTTACCTTGCGAAGAATCTCCCCAAGGCTGCTACAAGAGCCTTTGTTGAGAACTTAAGGGTGTTGTCACCAAAGGTTTTGCCAACTAGGGAGTTGCTGAGGTTTATGATTGTGTCCCTCATAAAAAAACTGAGGCAAAGTAGTTCACTCAAGTCTTCTTCAAGTGGGGGATCTAACAAATCTAGTAAGTCTCCTTTGAACTTCAAGACGGGTGTGGATCACTTTTGCCTCCACACAGGTGGAAAAGCTGTGATTGATGGGATTGGAATGAGCTTGGATCTGTGTGAGCATGATCTTGAGCCAGCAAGGATGACACTGCACCGTTTTGGCAACACTTCAGCTAGTAGCCTGTGGTATGTGCTAGGGTACATGGAGGCCAAGAAGAGGCTCAACAAAGGTGACAGAGTATTGATGATAAGCTTTGGTGCTGGCTTTAAATGCAACAGCTGTTTGTGGGAGGTAATGAAGGATCTGAAGAATGCAAATGTGTGGGAAGACTGCATTGATTGCTACCCACCAGACTCCTTGGCCAACCCTTTCTTGGAGAAGTTTGGATGGATCAACAATGTTGAGGATGCAACCACATTCAAACTTCCTGATTTTCTTCTCAAGTAA 1422 0.4564 MEFLTLLYGATALYLCFLIWKLFDQRRDRECYILDYQLYKPSDERKLGTECCGKIIGRNKHLGLNEYKFLLKAVVNSGIGEETYAPSNVIEGREANPTLLDGVTEMEEFFHDSIAKLLARSGMSPSQIDVLVVNVSMFACVPSLTSRIINHYKMRDDIKAYNLTGMGCSASLISLDIIRNVFKSQKNKCALLVTSESLSPNWYDGNDRSMILANCLFRTGGCVILLTNKRSLKHKAMLRLKCLVRTHHGAREDAYSCCNQKEDEQGRLGFYLAKNLPKAATRAFVENLRVLSPKVLPTRELLRFMIVSLIKKLRQSSSLKSSSSGGSNKSSKSPLNFKTGVDHFCLHTGGKAVIDGIGMSLDLCEHDLEPARMTLHRFGNTSASSLWYVLGYMEAKKRLNKGDRVLMISFGAGFKCNSCLWEVMKDLKNANVWEDCIDCYPPDSLANPFLEKFGWINNVEDATTFKLPDFLLK 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00460 473 Pfam FAE1/Type III polyketide synthase-like protein 25 312 IPR013601 GO:0006633|GO:0016020|GO:0016747
Cca10g00460 473 SUPERFAMILY Thiolase-like 243 424 IPR016039 GO:0016746
Cca10g00460 473 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 341 422 IPR013747 -
Cca10g00460 473 PANTHER 3-KETOACYL-COA SYNTHASE 1 462 - -
Cca10g00460 473 PANTHER 3-KETOACYL-COA SYNTHASE 1 462 IPR012392 GO:0006633|GO:0016020|GO:0016747
Cca10g00460 473 CDD CHS_like 12 421 - -
Cca10g00460 473 SUPERFAMILY Thiolase-like 17 231 IPR016039 GO:0016746
Cca10g00460 473 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 454 IPR012392 GO:0006633|GO:0016020|GO:0016747
Cca10g00460 473 Gene3D - 66 423 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00460 Cca-Chr10 4729926 4731988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00460 19 472 Acyl Lipid Metabolism Gene Families AT2G28630 68.478 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00460 K15397 - gmx:100776947 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00460 10 4729926 4731988 Cca10g00460 10 4729926 4731988 ECH
Cca10g00460 10 4729926 4731988 Cca04g00702 04 6908472 6910430 ECH
Cca10g00460 10 4729926 4731988 Cca04g00702 04 6908472 6910430 PCT