Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00702 aTGGATCTCCTCTGTCTCTTCTACCTCGTCCCAACGTTGTACGCGTGTTTCCTAATCTGGAAAATGTTGAACGAGAGAAGAGACAGAGAGTGCTACATCCTGGATTACCAATGCTACAAGCCCCCCAACGACCGAATGCTGGGAACAGAATTCTGCGGCCAACTCATCAAAAGAACCGAAAACCTGGGACCCAGCGAATACCGGTTTCTGCTAAAAGCCATCGTGAGCTCCGGCATCGGAGAACAAACCTACGCGCCGAGAAACATCTTCGAGGGGCGCGAGGGCTCGCCCACGCTCCGCGACGGCATAGGAGAAATGGAGGAGTTCTTCCACGACAGCATCGGGAAGCTCCTCTCACGCGCCGCCGTGTCCCCCTCGGAGATCGACCTCCTGGTGGTGAACATCTCCATGCTCGCCGCCCTCCCCTCCCTCTCGGCGCGCATCATCAACCGCTACAAGCTCCGCCACGACGTGAAGGTGTACAACCTCACCGGAATGGGGTGCAGCGCCAGCTTAATCTCCCTCGACATCGTGAAAAGCGTGTTCAAGACGCAACGTAACAAGCTCGCGTTGCTCGTCACTTCCGAGTCTCTCAGCCCCAACTGGTATTCCGGCAACGACAGATCCATGATTCTCGCTAACTGTCTCTTCCGCTCCGGAGGCTGCGCGATTCTCTTAACCAACAAAAGATCCATGAAGGACAAGGCCATGTTGAAGCTTAAGTGCTTGGTGCGAACGCACCACGGCGCGCGAGAAGAGGCTTATGGCTGTTGCATTCAACGCGAAGACGAAAGCGGAAGGTTAGGGTTTCATCTCGGTAAAACCCTCCCCAAGGCTGCTACAAGAGCTTTCGTTGATAACCTACGTGTCATTGCGCCTAAGATATTACCAACGCGAGAGTTGTTGAGGTTTCTCTTTGTTTCCCTTATCAAAAAACTGAACAAAAACAACACCCCCAAGGTCTCAGCCCTCGGCGCCACCAAGTCCCCGTTGAACTTCAGAACCGGCGTTGACCATTTCTGCTTGCACACCGGGGGAAAAGCGGTGATCGAAGGCATTGGAATGAGCTTAGATCTGAGCGAGTACGATCTTGAACCGGCGAGGATGACGCTGCACCGTTTCGGGAACACTTCGGCGAGTAGCTTGTGGTACGTTTTGTCGTACATGGAGGCGAAGAAGAGGCTGAAAAAGGGTGACACGGTGTTCATGATAAGCTTCGGTGCAGGCTTTAAATGCAATAGCTGTTTGTGGGAAGTAATGAAAGACATGGGTGACGCCAACGTGTGGGACGATTGCATTGAAAACTACCCACCAGATTCATTGGCCAACCCCTTCATGGAGACCTATGGTTGGATCAACCAAGTCGAGGATCCCAACACTTACGAAAATATTCCCGATTTTCTCAAGTGA 1410 0.5284 MDLLCLFYLVPTLYACFLIWKMLNERRDRECYILDYQCYKPPNDRMLGTEFCGQLIKRTENLGPSEYRFLLKAIVSSGIGEQTYAPRNIFEGREGSPTLRDGIGEMEEFFHDSIGKLLSRAAVSPSEIDLLVVNISMLAALPSLSARIINRYKLRHDVKVYNLTGMGCSASLISLDIVKSVFKTQRNKLALLVTSESLSPNWYSGNDRSMILANCLFRSGGCAILLTNKRSMKDKAMLKLKCLVRTHHGAREEAYGCCIQREDESGRLGFHLGKTLPKAATRAFVDNLRVIAPKILPTRELLRFLFVSLIKKLNKNNTPKVSALGATKSPLNFRTGVDHFCLHTGGKAVIEGIGMSLDLSEYDLEPARMTLHRFGNTSASSLWYVLSYMEAKKRLKKGDTVFMISFGAGFKCNSCLWEVMKDMGDANVWDDCIENYPPDSLANPFMETYGWINQVEDPNTYENIPDFLK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00702 469 PIRSF Very_long_ch_3-ktacl-CoA_syn 2 451 IPR012392 GO:0006633|GO:0016020|GO:0016747
Cca04g00702 469 SUPERFAMILY Thiolase-like 18 231 IPR016039 GO:0016746
Cca04g00702 469 CDD CHS_like 19 417 - -
Cca04g00702 469 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 337 418 IPR013747 -
Cca04g00702 469 SUPERFAMILY Thiolase-like 243 419 IPR016039 GO:0016746
Cca04g00702 469 Pfam FAE1/Type III polyketide synthase-like protein 25 312 IPR013601 GO:0006633|GO:0016020|GO:0016747
Cca04g00702 469 Gene3D - 76 419 IPR016039 GO:0016746
Cca04g00702 469 PANTHER 3-KETOACYL-COA SYNTHASE 1 458 - -
Cca04g00702 469 PANTHER 3-KETOACYL-COA SYNTHASE 1 458 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00702 Cca-Chr4 6908472 6910430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00702 19 466 Acyl Lipid Metabolism Gene Families AT2G28630 68.928 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00702 K15397 - gmx:100809149 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00702 04 6908472 6910430 Cca04g00702 04 6908472 6910430 ECH
Cca10g00460 10 4729926 4731988 Cca04g00702 04 6908472 6910430 ECH
Cca10g00460 10 4729926 4731988 Cca04g00702 04 6908472 6910430 PCT