Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00429 ATGGGTCAGACCCTCAGTTGCACACCCAACCACCACCACGCCCTCTTCTCCGCTGTCCACGACGGCGACCTCCGCCTCCTCATCGCTCTCCTGGAGGCCCACCCCTCTCTCCTGCACCAAACCACTCTCTACGACCGCCACTCCGCTCTCCATATTGCCGCCGCCAATTCCCAGATCGAGACTCCGCTTATGTTGGCGGCAATGCACGGGAACATCGCGTGTGTGGAGAAGCTTCTCGAAGCTGGGGCTAATGTGTTAATGTTTGATAGCATTTACGGGAGAACGTGTTTACACTATGCCGCTTACCACGGTCATTCTTCTTGCCTTAAGGCTATTCTTTCCGCTGCTCAATCTAGTCCAGTGGCTGCTTCTTGGGGGTTTGCTCGGTTTGTGAATATTAGAGATGGAAAGGGTACAACGCCATTGCACCTGGCGGCGCGTCAGAGACGGTCTGAATGTGTACATATTCTGTTAGATAGTGGAGCTCTTGTTTCTGCTTCAACTGGTGGATATGGTTGTCCTGGGAGCACTCCTCTTCATCTAGCAGCTAGAGGGGGATCTCTGGATTGCATTCGTGAATTGTTGGCTTGGGGTGCAGATCGTCTTCATCGTGATGCATCTGGGCGGATACCATATATGGTTGCTCTGAAACACAAACATGGAGCCTGTGCATCATTGCTAAATCCTACATCTGCAGAGCCTCTTGTCTGGCCGTCTCCATTGAAGTTCATCAGTGAGCTTAATCCTGAAGCCAAGGCTTTATTAGAACAGGCCCTGATGGATGCAAACAGAGAAAGGGAGAAAAACATATTGAAAGGGAGTGCTTACTCTCTTCCATCTCCTTCACATTCGGATGGGGTACCTGATGATAATATGTCTGAGGTTAGCGAGTCTGAATTATGCTGCATCTGCTTTGAGCAAGTATGCACAATTGAAGTTCAGAACTGTGGCCACCAGATGTGTGCACAATGCACACTAGCCCTGTGTTGCCACAACAAGCCCAACCCCGCCACGGCCTGTCTCACTCCTCCGGTTTGTCCATTTTGTCGAAGCACCATAACAAGACTCGTGGTTGTGAAGACAGAATGCCATGACGAAACTGATCAAGATAGTGTTGATATCAACTGTTCCAAGCTGAGCAAGTCAAGGAAACTCAGAAACTTGAACGACACCGGTAGCAGCAGCTTCAAGGGATTGTCCGGTGTTAGTTCATTCGGGAAATTGGGTAGCCGCAGCTCTGGAAGAATTGCTGCTGAGTGGCTTGATAAACAGTGA 1275 0.5012 MGQTLSCTPNHHHALFSAVHDGDLRLLIALLEAHPSLLHQTTLYDRHSALHIAAANSQIETPLMLAAMHGNIACVEKLLEAGANVLMFDSIYGRTCLHYAAYHGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGKGTTPLHLAARQRRSECVHILLDSGALVSASTGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRLHRDASGRIPYMVALKHKHGACASLLNPTSAEPLVWPSPLKFISELNPEAKALLEQALMDANREREKNILKGSAYSLPSPSHSDGVPDDNMSEVSESELCCICFEQVCTIEVQNCGHQMCAQCTLALCCHNKPNPATACLTPPVCPFCRSTITRLVVVKTECHDETDQDSVDINCSKLSKSRKLRNLNDTGSSSFKGLSGVSSFGKLGSRSSGRIAAEWLDKQ 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00429 424 Gene3D - 178 231 IPR036770 -
Cca10g00429 424 Pfam Ankyrin repeat 175 205 IPR002110 GO:0005515
Cca10g00429 424 ProSiteProfiles Ankyrin repeat profile. 137 169 IPR002110 GO:0005515
Cca10g00429 424 ProSiteProfiles Ankyrin repeat region circular profile. 58 85 - -
Cca10g00429 424 ProSiteProfiles Ankyrin repeat region circular profile. 174 200 - -
Cca10g00429 424 ProSiteProfiles Ankyrin repeat profile. 174 206 IPR002110 GO:0005515
Cca10g00429 424 ProSiteProfiles Zinc finger RING-type profile. 301 350 IPR001841 -
Cca10g00429 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 359 IPR013083 -
Cca10g00429 424 ProSiteProfiles Ankyrin repeat profile. 58 90 IPR002110 GO:0005515
Cca10g00429 424 ProSiteProfiles Ankyrin repeat region circular profile. 137 162 - -
Cca10g00429 424 PANTHER HOMEOBOX PROTEIN WARIAI 1 60 - -
Cca10g00429 424 PANTHER HOMEOBOX PROTEIN WARIAI 61 424 - -
Cca10g00429 424 Gene3D - 9 126 IPR036770 -
Cca10g00429 424 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 61 424 - -
Cca10g00429 424 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 60 - -
Cca10g00429 424 SUPERFAMILY Ankyrin repeat 14 230 IPR036770 -
Cca10g00429 424 SMART ANK_2a 207 236 IPR002110 GO:0005515
Cca10g00429 424 SMART ANK_2a 10 39 IPR002110 GO:0005515
Cca10g00429 424 SMART ANK_2a 174 203 IPR002110 GO:0005515
Cca10g00429 424 SMART ANK_2a 92 122 IPR002110 GO:0005515
Cca10g00429 424 SMART ANK_2a 58 87 IPR002110 GO:0005515
Cca10g00429 424 SMART ANK_2a 137 166 IPR002110 GO:0005515
Cca10g00429 424 Gene3D - 127 177 IPR036770 -
Cca10g00429 424 Pfam Ankyrin repeats (3 copies) 63 164 IPR002110 GO:0005515
Cca10g00429 424 SUPERFAMILY RING/U-box 296 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00429 Cca-Chr10 4403593 4407045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00429 62 195 Miscellaneous Gene Families AT5G60070 31.343 1.03e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00429 - - gmx:100786708 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00429 10 4403593 4407045 Cca10g00429 10 4403593 4407045 ECH
Cca10g00429 10 4403593 4407045 Cca04g00647 04 6357368 6360997 PCT