Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00647 ATGGGTCAGGGGCTTAGTTGCAGAGGGAGCCATGAACATGGCCTATTCCGTGCTGTGCAACATGGGGACCTTCAAACTGTTGCAGATTTGTTGCAAACACACCCTTCTCTTATGAATCACACCACTGTCTATGATCACCACTCTCCTCTTCATATTGCTGCTGCCAATGGCCAGATCCAGGTTTTATCGTGGCTTTTAGACGGATCTGTGAATCCAGATGTGTTGAATCGCCAAAAGCAGACACCGCTTATGTTGGCTGCAATGCACGGGAAGATCGCCTGTGTGGAGAAGCTACTTGAAGCCGATGCTAATGTATTGATGTTTGATGCGTGTTATGGGAGAACCTGCTTGCACTATGCTGCTTACTATGGCCATTCTTCTTGCCTTAAGGCAATTCTTTCTGCTGCTCAATCTAGTCCAGTGGCTGCTTCTTGGGGGTTTGCTCGGTTTGTGAATATTAGAGATGGTAGGGGTGCAACACCATTGCACTTGGCTGCCCGTCAAAGACGGTCTGAATGTGTACATATTCTATTGTGCAGTGGAGCTCTTGTTTCTGCTTCAACCGGAAGATACGGTTGTCCTGGGAGCACTCCTCTTCATCTTGCAGCCAAAGGGGGTTCCTTGGATTGCATCCGCGAACTGTTGGCATGGGGTGCAGATCGCCTTCAACGTGATGCCTCTGGGCGGATACCATACATAGTTGCTCTGAAACATAGGCACGGCGCATGTGCAGCATTGCTGAATCTTTCATCTGCTGAGCCTCTTGTATGGCCATCATCTTTGAAAGTGATTAGTGAGCTTAATTCAGACGCCAAAGAATTATTAGAGAGAGCCTTGATGGACGCAAATAGGGAAAGGGAGAAAAATATATTGAAAGGGAGTGATTACTCTCTTTCATCTCCATCACACTCTGATGGGGTAGTAGAGGAAAATATCTCTGAGGTTAGTGAGACTGAATTATGCTGCATCTGCTTTGAGCAAGTGTGTACAATTGAAGTTCAAGAGTGTGGTCACCAGATGTGTGCACAATGCACACTAGCCCTGTGTTGTCACAACAAGCCTAACCCTTCTACTTCTCGTGTTATCCCACCAGTTTGTCCGTTCTGCCGAAGCATCATAGCCAGATTGGTGGTTGTCAAAAAAGAAAGCCCTGATGAAATTGATCAAGATGGTGTTGATATCTCTTGTTCCAAGCCAAGCAAGTCAAGAAAAACTAGAAACATGAACGAGGGTGATAGCAGCAGCATCAAGGGACTATCAAGTGTGAACTCATTTGGAAAGATAGGTGGACGCAGCTCTGGAAAAATTGCTGCTGAAAATGAGTGGGAAGATGATAAACAGTAG 1344 0.4621 MGQGLSCRGSHEHGLFRAVQHGDLQTVADLLQTHPSLMNHTTVYDHHSPLHIAAANGQIQVLSWLLDGSVNPDVLNRQKQTPLMLAAMHGKIACVEKLLEADANVLMFDACYGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARQRRSECVHILLCSGALVSASTGRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYIVALKHRHGACAALLNLSSAEPLVWPSSLKVISELNSDAKELLERALMDANREREKNILKGSDYSLSSPSHSDGVVEENISEVSETELCCICFEQVCTIEVQECGHQMCAQCTLALCCHNKPNPSTSRVIPPVCPFCRSIIARLVVVKKESPDEIDQDGVDISCSKPSKSRKTRNMNEGDSSSIKGLSSVNSFGKIGGRSSGKIAAENEWEDDKQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00647 447 SUPERFAMILY RING/U-box 320 375 - -
Cca04g00647 447 SUPERFAMILY Ankyrin repeat 15 247 IPR036770 -
Cca04g00647 447 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Cca04g00647 447 MobiDBLite consensus disorder prediction 411 428 - -
Cca04g00647 447 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Cca04g00647 447 Coils Coil 268 288 - -
Cca04g00647 447 MobiDBLite consensus disorder prediction 387 410 - -
Cca04g00647 447 Gene3D - 9 144 IPR036770 -
Cca04g00647 447 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Cca04g00647 447 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Cca04g00647 447 Pfam Ankyrin repeats (3 copies) 15 107 IPR002110 GO:0005515
Cca04g00647 447 Gene3D - 198 251 IPR036770 -
Cca04g00647 447 PANTHER HOMEOBOX PROTEIN WARIAI 1 443 - -
Cca04g00647 447 SMART ANK_2a 78 107 IPR002110 GO:0005515
Cca04g00647 447 SMART ANK_2a 45 74 IPR002110 GO:0005515
Cca04g00647 447 SMART ANK_2a 157 186 IPR002110 GO:0005515
Cca04g00647 447 SMART ANK_2a 194 223 IPR002110 GO:0005515
Cca04g00647 447 SMART ANK_2a 10 39 IPR002110 GO:0005515
Cca04g00647 447 SMART ANK_2a 112 142 IPR002110 GO:0005515
Cca04g00647 447 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Cca04g00647 447 Pfam Ankyrin repeats (many copies) 194 235 IPR002110 GO:0005515
Cca04g00647 447 ProSiteProfiles Zinc finger RING-type profile. 321 370 IPR001841 -
Cca04g00647 447 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 443 - -
Cca04g00647 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 386 IPR013083 -
Cca04g00647 447 Gene3D - 146 197 IPR036770 -
Cca04g00647 447 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Cca04g00647 447 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Cca04g00647 447 Pfam Ankyrin repeats (many copies) 113 178 IPR002110 GO:0005515
Cca04g00647 447 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Cca04g00647 447 MobiDBLite consensus disorder prediction 387 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00647 Cca-Chr4 6357368 6360997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00647 32 247 Miscellaneous Gene Families AT5G02620 26.786 9.33e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00647 - - gmx:100800611 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00647 04 6357368 6360997 Cca04g00647 04 6357368 6360997 ECH
Cca10g00429 10 4403593 4407045 Cca04g00647 04 6357368 6360997 PCT