Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00420 ATGGGGACGCCTTTGTTCCATGAATTTAAAAGACAAGCTTCTTTCTTCCTCAAGGAAAAATTCAACTCTGCTAGATTAGCTCTCACCGATGTTACCCCTGCACAACTGATGACAGAAGAAGCTACAAAAGGAAATCCATGGGCCCCAGATTCCCCAACACTTGGATCAATTTCAAGGGCTGCTTTTGAGCTTGATGATTATTGGAGGATTGTAGAGATTCTACACAAAAGACTCCTTAAATTCGACAACAAGAATTGGAGGGCCTCCTACAATTCTCTGATTGTGCTGGAGCACCTACTGACTCATGGACCGGAAAGTGTTGCAGAGGAATTTAAGAGCGACAAAGATGTAATCAGCCAAATGAAATGCTTTCAGCATATTGATGGCAGTGGGTTCAACTGGGGTCTAACTGTTAGAAAGAAATCAGAACGGATATTGAAACTGCTTGAAGAAGGAACTCTCCTCAGGGAAGAAAGAAACCGTGCTCGGAGGTTGTCCAGAGGAATTCAAGGTTTTGGAAGTTTCAGCCAGCGGTCAACTCATGCACAAGGCGTTCTGAGGGAAAAATCATTGCCAACCACATTTGACAGATGCAACTCTGACTTCAACAACAATGAAAGTCAGGAAAACGAGTCCTTTTGTTCAAACCATTATTTGGGCACAGCAGCAGTTAAATCTCCTAGTTCTAGCCATCAGGGTGAAATTTTCAAGTCACAAGATGATATTGTAGAAACTGAGAGCAACAGGGATGATCAGGGAAACAATCAAATGCATCAGAAATCTGAAACAAGCTCTAAAGAAAATAAGACACCTAGAAAGGAGGAATTCCATCTATGGAACTTGAAAGGGGAATCCAATCCACTTTTGGATGGTAGCCAAGAGGATGATTCTAAAATTGGGATATTCGTAGCCGAAGATGATCACCCCTTTAACTCCACAGAAATGCATACCACTTTTTCCCTTCTTTCTTCCAGATGA 978 0.4202 MGTPLFHEFKRQASFFLKEKFNSARLALTDVTPAQLMTEEATKGNPWAPDSPTLGSISRAAFELDDYWRIVEILHKRLLKFDNKNWRASYNSLIVLEHLLTHGPESVAEEFKSDKDVISQMKCFQHIDGSGFNWGLTVRKKSERILKLLEEGTLLREERNRARRLSRGIQGFGSFSQRSTHAQGVLREKSLPTTFDRCNSDFNNNESQENESFCSNHYLGTAAVKSPSSSHQGEIFKSQDDIVETESNRDDQGNNQMHQKSETSSKENKTPRKEEFHLWNLKGESNPLLDGSQEDDSKIGIFVAEDDHPFNSTEMHTTFSLLSSR 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00420 325 SUPERFAMILY ENTH/VHS domain 12 159 IPR008942 -
Cca10g00420 325 Pfam ENTH domain 32 153 IPR013809 -
Cca10g00420 325 CDD ENTH 34 150 - -
Cca10g00420 325 SMART enth_2 32 159 IPR013809 -
Cca10g00420 325 PANTHER EPSIN-2-LIKE 4 324 - -
Cca10g00420 325 PANTHER EPSIN/ENT-RELATED 4 324 - -
Cca10g00420 325 Gene3D - 28 175 IPR008942 -
Cca10g00420 325 MobiDBLite consensus disorder prediction 243 273 - -
Cca10g00420 325 ProSiteProfiles ENTH domain profile. 26 159 IPR013809 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00420 Cca-Chr10 4336704 4338894 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00420 K12471 - gmx:100812797 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00420 10 4336704 4338894 Cca10g00420 10 4336704 4338894 ECH
Cca10g00420 10 4336704 4338894 Cca04g00642 04 6336255 6338429 PCT