Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00642 ATGTCCATAGCGTTGAATAAAATTAACAGCAGCAAGATGAGCACACCCTTGTTCCATGAATTCAAAAAGCAAGCTTCTTTCTTCCTCAAGGAGAAAATCAAGACTGCCAGATTGGCTCTAACAGATGTCACCCCTGCAGAACTGATGACAGAAGAGGCAACTAGTGGAAATCCATGGGCCCCAGATTCCAGAACCCTCAGATCAATTTCAAGGGCTGCTTTTGAGCTAGATGATTATTGGAGGATTGTGGAGATTCTGCATAAAAGGTTTCTTAAATTTGAAAAGAAGAATTGGAGGGTCTCCTACAATTCCCTGATTGTGCTTGAGCACCTGTTGACTCATGGACCAGAGAGTGTTGCTGAGGAATTCAAGAGTGACAAAGATGTTATTAGTCAGATGATAGGTTTTCAGTATATTGATGACACTGGGTTTAATTGGGGCCTAACTGTCAGAAAGAAATCTGAGAGGATAATGAAACTGCTGGAAGAAGGAACTCTTCTCAAGGAAGAGAGAAAAAGTGCTAGAAGGTTATCTAGAGGGATTGAGGGTTTTGGAAGTTTCTCTCATCGGTCAACTCCGGCACAAGCCATTCTACCACTACGTGAGAAATCATTGCCAACCACACTTAGGAGATATGACTCGGACTTAAGCAACCATGAAGATCAAGAAAACCAGTCCTTTTGTTCAAACAATGGTGAGGACAAAGTAGCTGTCAAATCTCCTAGCATTGAAGGTGGGACTTTCAAGTCCTTGGGTAGTGTGGAAAGCAAGGGATACCAGGATGATCTTGGCACCAATCAAATGCATCAGAAATCTGAAACAAGTTCTAAAGAAAACATGGAACCTAGCAAGGAGGAGTTCCATCTGTGGAACTTGAAAGGGGAGTCCAAACCACTTTTGGATTGTGGTGAAGAGGATTCCAAGTTTGTCAGAACAGAAGATGATCACCCCTTTAATTCAACAGAATTCATGCCACTGCCTCTCTGCTTTCTGCTAGAGACGGAATACTACAAGGGTGTTGAAATAATTTGA 1032 0.4225 MSIALNKINSSKMSTPLFHEFKKQASFFLKEKIKTARLALTDVTPAELMTEEATSGNPWAPDSRTLRSISRAAFELDDYWRIVEILHKRFLKFEKKNWRVSYNSLIVLEHLLTHGPESVAEEFKSDKDVISQMIGFQYIDDTGFNWGLTVRKKSERIMKLLEEGTLLKEERKSARRLSRGIEGFGSFSHRSTPAQAILPLREKSLPTTLRRYDSDLSNHEDQENQSFCSNNGEDKVAVKSPSIEGGTFKSLGSVESKGYQDDLGTNQMHQKSETSSKENMEPSKEEFHLWNLKGESKPLLDCGEEDSKFVRTEDDHPFNSTEFMPLPLCFLLETEYYKGVEII 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00642 343 PANTHER EPSIN/ENT-RELATED 16 318 - -
Cca04g00642 343 SMART enth_2 44 171 IPR013809 -
Cca04g00642 343 MobiDBLite consensus disorder prediction 216 235 - -
Cca04g00642 343 ProSiteProfiles ENTH domain profile. 38 171 IPR013809 -
Cca04g00642 343 MobiDBLite consensus disorder prediction 247 285 - -
Cca04g00642 343 CDD ENTH 46 162 - -
Cca04g00642 343 Gene3D - 40 187 IPR008942 -
Cca04g00642 343 MobiDBLite consensus disorder prediction 221 235 - -
Cca04g00642 343 Pfam ENTH domain 44 165 IPR013809 -
Cca04g00642 343 PANTHER EPSIN-2-LIKE 16 318 - -
Cca04g00642 343 MobiDBLite consensus disorder prediction 259 273 - -
Cca04g00642 343 SUPERFAMILY ENTH/VHS domain 24 171 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00642 Cca-Chr4 6336255 6338429 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00642 K12471 - gmx:100811093 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00642 04 6336255 6338429 Cca04g00642 04 6336255 6338429 ECH
Cca10g00420 10 4336704 4338894 Cca04g00642 04 6336255 6338429 PCT