Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00381 ATGGCTGAGAAAGAGAGTATGTATTGGTTAGGTGATTGGAGGAGAATACCAATTTGCACTTTCTTTAAGGATGCCAGACTAGTTTTTAAAGCAGACAGTCTTGGTCGGGAAATTTTGTCAATTGCATTACCTGCAGCAATGGCTTTGACAGCTGATCCTATTGCTTCACTGGTTGACACAGCTTTTATTGGTCAAATAGGTCCAATCGAGCTTGCTGCTGTAGGTGTTTCCATAGCTCTCTTCAACCAAGTATCACGGATCGCAATATTCCCACTTGTCAGTGTTACAACCTCTTTTGTGGCTGAGGAAGATTCCCTCAGTGAAGCAAGCCCTGAGAGAGAGGACAGTAGATGCTTGGAAGCAGGTCCACCTATGGATGCTGAATCCAAAGAGTTATTACCACAGAAAGTTTCAGGTGGAAATGTTCACAATTCAGATTTTGTTGGCGAAAGTTTTAATATGGTTAAGGAGGAACATAAGAGAAGGCATATTCCTTCAGCTTCATCAGCATTATTTATTGGTGGCATTCTTGGACTCATCCAGGCAATATTTCTTATAGTTGCAGCAAAACCTTTATTGAACTTCATGGGAGTGACTTCTGACTCTCCTATGCTACATCCTGCCCAGCAGTATCTGACATTGAGGTCCCTTGGTGCTCCTGCCGTTCTTCTTTCATTAGCGATGCAGGGAGTCTTCCGAGGATTTAAAGACACTAAAACTCCCTTATATGCGACTGTGGCAGGAGATGTAACCAACATAGCACTAGATCCTTTATTCATGTTTGTGTTCCGCATGGGTGTCAGTGGTGCAGCCATTGCTCACGTCATATCTCAGTACCTGATTTCAGCTATACTCCTGTGGAGGCTGTTGGAACAAGTTGACCTTATACCTCCAAGCATGAAGCATATGCAATTTGACCGATTTCTTAAAAATGGTTTTCTATTATTAATGAGAGTCATTGCTGTAACATTCTGTGTGACGCTGGCTGCATCATTGGCAGCAAGGCAAGGATCAACATCCATGGCAGCATTTCAAGTATGTTTGCAGGTTTGGTTGGCAGTGTCTCTTCTTGCTGATGGTCTAGCTGTTGCTGGGCAGGCGATTCTTGCCGGAGCATTTGCTAATAAGGACTACGACAGGGCCACGGCAACTGCATCCCGAGTTTTGCAGATGGGTTTGGTTCTAGGATTGGCACTTGCATTCATTCTTGGAACAGGATTGCACTTTGGTGCTAAGCTATTCACAAAAGATGCTGATGTCCTTCACCTCATTCAAATTGGGATCCCGTTTGTTGCAGCCACTCAACCCCTGAATTCTTTAGCATTTGTATTTGATGGTATCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTATCCATGGTTTTGGTGGCCATTCTTAGCATAATTTGTCTTCTTATTTTGTCATCCGCTGGTGGTTTCATCGGAATTTGGGTTGCTTTGACTATCTACATGGGTCTTAGGGCATTTGCTGGCTTCTCGAGGATTGGAACGGGGTCAGGACCTTGGGAGTTCCTAAGGAGCTCATGA 1551 0.4397 MAEKESMYWLGDWRRIPICTFFKDARLVFKADSLGREILSIALPAAMALTADPIASLVDTAFIGQIGPIELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDSLSEASPEREDSRCLEAGPPMDAESKELLPQKVSGGNVHNSDFVGESFNMVKEEHKRRHIPSASSALFIGGILGLIQAIFLIVAAKPLLNFMGVTSDSPMLHPAQQYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDVTNIALDPLFMFVFRMGVSGAAIAHVISQYLISAILLWRLLEQVDLIPPSMKHMQFDRFLKNGFLLLMRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQVWLAVSLLADGLAVAGQAILAGAFANKDYDRATATASRVLQMGLVLGLALAFILGTGLHFGAKLFTKDADVLHLIQIGIPFVAATQPLNSLAFVFDGINFGASDFAYSALSMVLVAILSIICLLILSSAGGFIGIWVALTIYMGLRAFAGFSRIGTGSGPWEFLRSS 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00381 516 Pfam MatE 317 470 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca10g00381 516 Pfam MatE 166 258 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca10g00381 516 PANTHER PROTEIN DETOXIFICATION 8 514 - -
Cca10g00381 516 TIGRFAM matE: MATE efflux family protein 44 485 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca10g00381 516 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 8 514 IPR044644 -
Cca10g00381 516 CDD MATE_DinF_like 34 505 IPR044644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00381 Cca-Chr10 4029567 4034529 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00381 K03327 - gmx:100780165 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00381 10 4029567 4034529 Cca10g00381 10 4029567 4034529 ECH
Cca10g00381 10 4029567 4034529 Cca04g00581 04 5840299 5844453 ECH
Cca10g00381 10 4029567 4034529 Cca04g00581 04 5840299 5844453 PCT